[Bio-software] SNP Analysis : Parser for Polybayes result

Elango, Palchamy (ICRISAT-IN) p.elango at cgiar.org
Fri May 26 01:04:28 EST 2006



I am using Polybayes program [Author: Prof. Gabor T. Marth] for SNP analysis.

I wish to parse and extract SNP associated information from the output (textual mulitple sequence alignment) of Polybayes program.

Alternatively I am trying out the possibilities of  converting the polybayes alignment output into any standard multiple alignment format, so that I can able to use other SNP analysis programs that read multiple sequence alignment files as input.

I wish to use your parser script or any bioperl / biojava module.
Does anyone know or use any bioperl /biopython /biojava module ?
I shall be grateful if you could kindly provide me some tips or additional information on this.

Thanking you
Elango
P.Elango
 
GT-Biotechnology, 
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), 
Patancheru - 502 324, Andhra Pradesh, India.   
Work:  +(91) 40 307 13321 , Home: +(91) 40  559 98770 /  +(91) 98854 98770 (Mobile) 
pelango at cgiar.org <mailto:pelango at cgiar.org>   www.cgiar.org <http://www.cgiar.org>   elango at palchamy.com <mailto:elango at palchamy.com>  





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