[Bio-software] Exonerate

Natacha via bio-soft%40net.bio.net (by natabeck from gmail.com)
Tue Mar 20 09:09:25 EST 2007


Hi all,

I try to use Exonerate, http://www.ebi.ac.uk/~guy/exonerate/, is a
generic tool for pairwise sequence comparison. I want particularly use
the model protein2genome with an aim to define the position of
intron , this model will allow introns in the alignment, but also
allow frameshifts, and exon phase changes when a codon is split by an
intron.
But I use a genome who have a genetic code 4, and i don't find the
option for change the genetic code in exonerate, but I think that must
possible. I have read the help and the manual but I haven't see this
option.
Somebody could help me ?

Thanks
Natacha



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