[Bio-software] Re: Bio-soft Digest, Vol 30, Issue 5

Amit Dattatreya Parhar via bio-soft%40net.bio.net (by amit.p from ocimumbio.com)
Thu Nov 15 23:49:08 EST 2007


Visit NCBI FTP site and browser to NCBI toolkit. its open source and written
in C++ . download it. I guess there is blast parser in there.

regards,
Amit
----- Original Message ----- 
From: <bio-soft-request from oat.bio.indiana.edu>
To: <bio-soft from magpie.bio.indiana.edu>
Sent: Thursday, November 15, 2007 10:34 PM
Subject: Bio-soft Digest, Vol 30, Issue 5


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>    1. Re: Bio-soft Digest, Vol 29, Issue 7 (abhisheknayak28 from gmail.com)
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> Message: 1
> Date: Wed, 14 Nov 2007 21:50:24 -0800 (PST)
> From: abhisheknayak28 from gmail.com
> Subject: [Bio-software] Re: Bio-soft Digest, Vol 29, Issue 7
> To: bionet-software from moderators.isc.org
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> Dear Amit
>
> Thanks for the reply , but the link which you have mentioned have the
> code written in java and pearl , and as I have already mentioned that
> I need the code written only in c++
>
> Regards,
> Abhishek
>
> Amit Dattatreya Parhar wrote:
> > Blast Output parser in C++
> >
> > Dear Abhishek,
> >
> > There are many blast parsers available . Here are the links for codes in
> > JAVA, C and PERL
> >
> >
http://www.hip.harvard.edu/informatics/programs/JAVA%20BLAST%20Parser.html
> >
> > http://bioinfo.iq.usp.br/zerg/
> >
> > http://www.bios.niu.edu/johns/bioinform/perl_blast_parser.htm
> >
> > Amit
> > Bioinformatics Analyst
> > amit.p from ocimumbio.com
> >
> >
> > ----- Original Message -----
> > From: <bio-soft-request from oat.bio.indiana.edu>
> > To: <bio-soft from magpie.bio.indiana.edu>
> > Sent: Monday, October 29, 2007 10:34 PM
> > Subject: Bio-soft Digest, Vol 29, Issue 7
> >
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> > >    1. Blast Output parser in C++ (Abhishek Nayak)
> > >
> > >
> > > ----------------------------------------------------------------------
> > >
> > > Message: 1
> > > Date: Mon, 29 Oct 2007 12:24:29 +0530
> > > From: Abhishek Nayak <abhishek.nayak from atc.tcs.com>
> > > Subject: [Bio-software] Blast Output parser in C++
> > > To: bio-soft from magpie.bio.indiana.edu
> > > Message-ID: <1193640869.2894.20.camel from localhost.localdomain>
> > > Content-Type: text/plain
> > >
> > > Hi,
> > >    Dose anyone knows of a Blast output Parser whose source code is
> > > written in C++ and is a open source.
> > > I am in great need of it. If anyone knows of it please reply back.
> > >
> > > Regards,
> > > Abhishek Nayak
> > >
> > >
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