From didari_maryam from yahoo.com Mon May 5 07:49:53 2008 From: didari_maryam from yahoo.com (maryam didari) Date: Mon May 5 10:23:59 2008 Subject: [Bio-software] in silico ARDRA Message-ID: <372394.58930.qm@web58107.mail.re3.yahoo.com> Dear all, I am working on in silico ARDRA of a group of bacteria, i got the rDNA sequences from RDP ,but now i am confuse . At first i generated in silico patterns with software, and i want to compare pattern with each other to choose the best restriction enzymes from 11 enzymes that i have been used in in silico analysis. Now my problem is how compare these patterns and am i working and thinking true? Is it Ok to compare pattern in image format or it is better to compare them in the form of lenght of generated bands? Regards: Maryam --------------------------------- Be a better friend, newshound, and know-it-all with Yahoo! Mobile. Try it now. From cpapetti from mail.bio.unipd.it Fri May 30 10:58:46 2008 From: cpapetti from mail.bio.unipd.it (chiara papetti) Date: Fri May 30 13:27:37 2008 Subject: [Bio-software] PartitionML Message-ID: <20080530155720.E071D7A65E@mail.bio.unipd.it> Dear Bio-soft members, I would like to try PartitonML to analyze my dataset but I could not download it from its link (ftp://162.38.181.25/pub/partitionml.zip). Please, could anyone mail me the program or help me with any hint to download it? Many thanks in advanceChiara Dr. Chiara Papetti Biology Dept University Of Padova Via G. Colombo I-35100 Padova Italy e-mail cpapetti@bio.unipd.it chiara.papetti@unipd.it Tel 0039 049 8276222