[Bio-software] SNP Analysis : Parser for Polybayes result
(by parsonsl from upstate.edu)
Fri Oct 31 16:17:10 EST 2008
I am the author of that web page, which is no longer up because the lab
itself no longer exists.
There should have been a redirect link back in 2006 when you wrote that
message, however the redirect link itself would no longer work at this
point. I have attached the perl script that was mentioned in the link, feel
free to use it however you like.
I apologize for not getting this to you sooner, hopefully someone can make
use of this old script.
> forgotten link: http://www.ccgb.umn.edu/~lparsons/downloads/index.html
> i.j.nijman from gmail.com wrote:
>> Have you seen this page? There's a simple script which parses the
>> polybayes output.
>> Ies Nijman
>> Elango, Palchamy (ICRISAT-IN) wrote:
>> > I am using Polybayes program [Author: Prof. Gabor T. Marth] for SNP
>> > I wish to parse and extract SNP associated information from the output
>> (textual mulitple sequence alignment) of Polybayes program.
>> > Alternatively I am trying out the possibilities of converting the
>> polybayes alignment output into any standard multiple alignment format,
>> so that I can able to use other SNP analysis programs that read multiple
>> sequence alignment files as input.
>> > I wish to use your parser script or any bioperl / biojava module.
>> > Does anyone know or use any bioperl /biopython /biojava module ?
>> > I shall be grateful if you could kindly provide me some tips or
>> additional information on this.
>> > Thanking you
>> > Elango
>> > P.Elango
>> > GT-Biotechnology,
>> > International Crops Research Institute for the Semi-Arid Tropics
>> > Patancheru - 502 324, Andhra Pradesh, India.
>> > Work: +(91) 40 307 13321 , Home: +(91) 40 559 98770 / +(91) 98854
>> 98770 (Mobile)
>> > pelango from cgiar.org <mailto:pelango from cgiar.org> www.cgiar.org
>> <http://www.cgiar.org> elango from palchamy.com <mailto:elango from palchamy.com>
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