[Bio-software] short-reads assemble and mapping

zhuocheng Hou via bio-soft%40net.bio.net (by zchou from wayne.edu)
Wed Apr 22 11:55:21 EST 2009


Hi Everyone,

I am seeking for software which can assembl short-reads (<60bp) and also can
use draft genomic data to pileup data. As I know, MAQ, Velvet, ELAND etc
didn't use draft genome data. I guess we can get the better assembl results
by incoporating the short-reads and genomic data. Can anyone give me some
clues about these kinds of software?

Thanks,
Zhuocheng


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