[Bio-software] Re: short-reads assemble and mapping

lry198010 via bio-soft%40net.bio.net (by lry198010 from gmail.com)
Tue Apr 28 06:16:09 EST 2009


On Apr 23, 12:55 am, zhuocheng Hou <zc... from wayne.edu> wrote:
> Hi Everyone,
>
> I am seeking for software which can assembl short-reads (<60bp) and also can
> use draft genomic data to pileup data. As I know, MAQ, Velvet, ELAND etc
> didn't use draft genome data. I guess we can get the better assembl results
> by incoporating the short-reads and genomic data. Can anyone give me some
> clues about these kinds of software?
>
> Thanks,
> Zhuocheng

Hi:
   I have remember that bioinformatics or BMC bioinformatics have
publish a paper recently, which introduce a new assembly tool agree
with the requirement.



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