Funny CDS from srs...

Robert Herzog rherzog at ben.vub.ac.be
Sat Nov 25 18:33:19 EST 1995


Hello,
I have been extracting several hundreds of CDS from various sequences lately, i
and found a funny extraction from the MIDMM1 file (from Drosophila) :

the second CDS srs extracts is as follows:

MIDMM1  Length: 1536  Check: 5450  ..

       1  @M at CGACAAT GATTATTTTC TACAAATCAT AAAGATATTG GAACTTTATA TTTTATTTTT
      61  GGAGCTTGAG CTGGAATAGT TGGAACATCT TTAAGAATTT TAATTCGAGC TGAATTAGGA
     121  CATCCTGGAG CATTAATTGG AGATGATCAA ATTTATAATG TAATTGTAAC TGCACATGCT
     181  TTTATTATAA TTTTTTTTAT GGTTATACCT ATTATAATTG GTGGATTTGG AAATTGATTA

two or three unusual bases at the start of this one...!

This sequence is from a GCG file, out of which a lookup produces the proper 
data.

I get the error with SRSWWW as well as with the vt100 version (rel 4.08).
I tried this query out of another srswww server (Basel) and found the same 
error as from our's.

What is wrong ?

Robert Herzog





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