srs and gcg 8.1 sequence databases

Thure Etzold etzold
Thu Oct 26 15:05:50 EST 1995


for all who wish to run the native srs with sequence databases of gcg 8.1:

edit the file odd/srsgeneral.sdl and modify the definition of "GCGSEQ_FILE"
to the following

#filetype /ID=%GCGSEQ_FILE 
          /typename=seq /maxline=20000 
          /begstr=">>>>" /advance=0 /exitstr=">>>>" 
          /seqtype=gcg8_1

the seqtype "gcg8_1" makes sure that the split sequences (>350000bp) are 
treated correctly.

regards
thure etzold





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