indexing Genbank 97 from gcg format

Martin Hilbers mph at dl.ac.uk
Thu Oct 31 07:10:16 EST 1996


Hi folks,

Has anybody been able to index genbank 97 from gcg formatted files ? -
For me indexing keeps falling over on entry HSHLAK1 in the primates
section. 
The error message I get is:
e__nammismatch, names are not identical
"HSHLAK1" and "C"

It does not occur with the plain genbank files. It can't have anything
to do with the size of genbank, as it also occurs if I restrict 
genbank to the primates section. As far as I can tell the gcg
seq and ref file are completely normal for this entry.
srsbuild is apparently supposed to produce this error message if
the names in the ref and seq files are not the same, but as far as I
can tell they are the same, and I really don't understand were this "C"
in the error message comes from.

Any ideas ?

-- 
---------------------------------------------------------------------------
|  Martin Hilbers          |       E-mail:
m.p.hilbers at dl.ac.uk           |
|  SEQNET                  |       Tel:   
+44-1925-603492                |
|  Daresbury Laboratory    |       Fax:   
+44-1925-603100                |
|  Daresbury, Warrington  
|----------------------------------------------|
|  Cheshire WA4 4AD        |    SEQNET is the UK national EMBNet
node     |
|  United Kingdom          |   
http://www.dl.ac.uk/SEQNET/home.html      |
---------------------------------------------------------------------------




More information about the Bio-srs mailing list