blast on srs5.1

Jean-Marc Plaza plaza at infobiogen.fr
Thu Dec 4 06:34:23 EST 1997


I have a problem with the output of blast application
We use  blast 1.4.9MP.
the message error for the blast research is :

file could not be opened
 "blast_nam.inx"
Information:
no entries found, query: "[blast-name:temp]" 

but the script file ans the result is built:

blast.csh
blast_id.dbs
temp.blast
tmp.seq
user.par


Is it a problem of prasing blast output of  1.4.9MP? 
Regards,
Jean-Marc
--------------------------------------------------------------
more temp.blast 
BLASTP 1.4.9MP [26-March-1996] [Build 14:46:45 May  2 1997]
 
Reference:  Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers,
and David J. Lipman (1990).  Basic local alignment search tool.  J. Mol.
Biol.
215:403-10.
 
 
Query=  104K_THEPA
        (924 letters)
 
Database:  /env/infobiogen/db/swissprot/SPblast/sprot
           59,021 sequences; 21,210,388 total letters.
Searching..................................................done
 
WARNING:  -hspmax 100 was exceeded with 18 of the database sequences,
with as
          many as 303 HSPs being found at one time.
 
                                                                    
Smallest
                                                                      
Sum
                                                              High 
Probability
Sequences producing High-scoring Segment Pairs:              Score 
P(N)      N
 
 sw|P15711|104K_THEPA 104 KD MICRONEME-RHOPTRY ANTIGEN.       4916 
0.0       1
 sw|P19246|NFH_MOUSE NEUROFILAMENT TRIPLET H PROTEIN (200...   112 
7.9e-13   3
 sw|P16884|NFH_RAT NEUROFILAMENT TRIPLET H PROTEIN (200 K...   100 
3.5e-12   4
 sw|P14918|EXTN_MAIZE EXTENSIN PRECURSOR (PROLINE-RICH GL...   115 
2.4e-11   2
 sw|P24152|EXTN_SORVU EXTENSIN PRECURSOR (PROLINE-RICH GL...   109 
2.5e-11   3
 sw|Q00451|PRF1_LYCES 36.4 KD PROLINE-RICH PROTEIN.            101 
3.5e-11   4
...



-- 
---------------------------------------------------
Jean-Marc PLAZA
INFOBIOGEN - CNRS
7, rue Guy Moquet BP8 94801 VILLEJUIF Cedex, France
tel: +33 45 59 52 39  fax: +33 45 59 52 50
e-mail: plaza at infobiogen.fr
---------------------------------------------------




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