need help

Denise D. Schmoyer dcs at ornl.gov
Wed Jan 13 07:45:12 EST 1999


Peter Rice wrote:

> Jean-Marc Plaza <plaza at infobiogen.fr> writes:
>
> > hello,
> > I find a problem when indexing embl 57 in srs
> > for the feature PID only(ftpid).
> > The srsbuild crashes with the -m option which Merge index partitions
> > to a single index:
>
>
> SRS has big problems when the first section of the index has no data.
> The empty file breaks the merge. Thure knows about it. I guess there
> will be a fix in SRS 6 :-)
>
> ----------------------------------------------------------------------
> Peter Rice                | Informatics Division, The Sanger Centre,

I experienced this same problem with an index I was building for Genbank.
I was
able to work around the problem by increasing the number of entries that are
to be
indexed separately for later merging.  This is done in the databank .i file
with the
partsize argument for the $library class.  I increased the partsize from
100000 to
500000, my first section of the index then had some IDs so the merge worked.
----------------------------------------------------------
Denise Schmoyer
Oak Ridge National Laboratory
E-mail: dcs at ornl.gov
Phone:  (423) 574-5707





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