Contribution: A WWW server meta index (by Fredj Tekaia, Inst. Pasteur)

Reinhard Doelz doelz
Sun Oct 2 15:50:02 EST 1994

<base href="">
<TITLE>Molecular Bioloy and BioInformations</TITLE>
<H1>Molecular Biology and BioInformations WWW sampler</H1>

   This Molecular Biology and BioInformations-WWW sampler was assembled 
to allow users quick access to interesting WWW services without searching
through hundreds of HyperMedia links. To access any link just "point and click"
for xmosaic users or "point and select" for lynx users.
Suggestions to include URLs of interest are welcome.
<adress><p>Fredj Tekaia tekaia at</adress>.
<li><a href="#MBS"><h3>Molecular Biology related Servers</h3></a>
<li><a href="#MED"><h3>Biomedical Servers</h3></a>
<li><a href="#DBS"><h3>Collection of single and multiple databases</h3></a>
<li><a href="#S3D"><h3>Protein Structure and 3D Modeling</h3></a>
<li><a href="#OSAST"><h3>On-line sequence analysis and search tools</h3></a>
<li><a href="#DOC"><H3>Documents/Bibliographies/Informations Search</H3></a>
<li><a href="#REC"><H3>Recreation</h3></a>
<a name="MBS"><h2>Molecular Biology related Servers</h2>
<li><a href="">Johns Hopkins University BioInformatics Web Server</a>
<li><a href="">Harvard Biological Laboratories</a>
<li><a href="">Australian National University</a> (Molecular Biology servers)
<li><a href="">University of Geneva (Expasy)</A>
<li><a href="">EMBnet: The European Molecular Biology Network</A>
<li><a href="">EBI</a> European Bioinformatics Institute
<li><a href="">NCBI The National Center for Biotechnology Information</a>
<li><a href="">Institute for Molecular Virology at the University of Wisconsin</a>
<li><a href="">Information Theory and Molecular recognition</a>
<li><a href="">Pole Bioinformatique de Villejuif</a>
<li><a href="">NUS-BioMed Web Server</a> (Singapore)
<li><a href="">WebWorld</a> A virtual-reality like place, to move around, build things,...
<li><a href="">National Center for Genome Resources</a> (Genome Sequence DB, 
SIGMA System for Integrated Map Assembly)
<li><a href="">HGMP WWW server</a> (Hinxton)

<li><a href="gopher://">IUBio Gopher</A>
<li><a href="gopher://">John's Hopkins Gopher</A>
<li><a HREF="gopher://">The MegaGopher</a>
<li><a href="gopher://">Bio Gopher List</a> (Exhaustive list of Biology related Gophers) 
<li><a href="gopher://">Bio Gophers</a> (Exhaustive list of gophers)
<li><a href="gopher://">NCBI-Seqalign Definitions</a>
<li><a href="gopher://">NIH Gopher</A>
<li><a href="">Gene-Server</a>(University of Houston)
<a name="MED"><h2>Biomedical Servers</h2>
<li><a href="gopher://">Medical and Health gophers</a> (Exhaustive list of 
Medical and Health resources)
<li><a href="gopher://">National Cancer Center</a> (CancerNet Japan)
<li><a href="gopher://">Bio Med Gopher Space</a> (List of Medical resources)
<li><a href="">Oncolink</a> (U. Pensylvania Multimedia Oncology Resource)
<h2>Other Servers</h2>
<li><a href="">UCSD Neuroscience</a>
<li><a href="">Neurosciences Internet Resource Guide</a> (Selected Neuroscience resources)
<li><a href="">Science</a>(at GNN O'Reilly) <a href="">Science</a> (at Stanford) (links by subject)
<li><a href="">Yahoo</a> Guide to WWW (All servers by subject)
<li><a href="">The whole internet Catalog</a>
<li><a href="">Servers in Europe</a> (Flags)
<li><a href="">Servers in France</a> (map)
<a name="DBS"><h2>Collection of databases</h2>
<li><a href="">Search Genbank and other databases</a> (at the ncbi)
<li><a href="">Network Browser for Databanks in Molecular Biology (SRS)</a>
<li><a href="">SwissProt Protein Sequence Database</a>
<li><a href="">Prot-Web</a> Collection of Protein Databases
<li><a href="">DBGET Database Integrated Databse Retrieval System (Japan)</a>
<li><a href="">ncbi Entrez Browser</a> (DNA/RNA+Protein+Medline subset)
<li><a href="">NIH GenoBase Server</A>
<li><a href="">Prosite- Dictionary of protein sites and Patterns</a>
<li><a href="gopher://">DNA and Protein Sequence Databases</A>
<li><a href="">Search REBASE</a> (Restriction Enzyme Database)
<li><a href="">Swiss-2DPage- 2D-Polyacrylamide Gel Electrophoresis Database</a>
<B>Other Model Organism Databases</B>
<li><i>Arabidopsis</i> <a href="gopher://">AAtDB</A>
<li><p><i>C.elegans</i> <a href="">ACeDB</A>.  <a href="gopher://">ACeDB via gopher</A>  <a href="gopher://">Bibliography</A>.  <a href="">Avery Lab</a></p>
<li><i>Drosophila</i> <a href="gopher://">FlyBase</A>
<li><a href="">GDB The Genome Database</a>
<li><a href="">GDB Browser</a>
<li><a href="">OMIM-- Online Mendelian Inheritance In Man</a>
<LI><a href="gopher://">Genome Data Base</A>
<LI><a href="gopher://">On-line Mendelian Inheritance in Man</A>  
<LI><a href="">Genethon</a>
<LI><a href="">Human Genome Physical Map</a> from CEPH-Genethon (at <a href="">U.Michigan Genome Center</a>)
<LI><a href="">Integrated Genome Database</a> at <a href="">Moulon, France</a>
<li><a href="">MGD : The Mouse Genome Database</a>
<li><a href="">Portable Dictionary of the Mouse Genome</a>
<LI><a href="gopher://">Encyclopedia of the Mouse Genome</A>
<LI><a href="">Mouse Locus Catalog</a>
<LI><a href="">Jackson Laboratories</A>
<li><a href="">TBASE</a> (The Transgenic/Targeted Mutation Database)
<li><a href="gopher://">Saccharomyces</A>
<li>Mycobacteria <a href="gopher://">MycDB</a>
<li><a href="">Microbiology</a> (Culture Collections)
<li><a href="gopher://">ATTC</a>, <a href="gopher://">ECACC</a>, <a href="gopher://"> JFCC&JTCA</a>
<li><a href="">EXTOXNET</a> EXTOXNET - EXtension TOXicology NETwork
<a name="S3D"><h2>Protein Structure and 3D Modeling</h2> (see also <a href="#DOC">Documents</a>)
<li><a href="gopher://">Search PDB</a> (Protein Data Bank)
<li><a href="">Search NRL_3D</a> (sequence - PDB structure)
<li><a href="">The NIH Molecular Modeling Home Page</a>
<li><a href="">Index of Images of Molecular models</a> (From Exapasy)
<li><a href="">SCOP </a>Structural Classification of Proteins 
(structural and evolutionary relationships - PDB proteins)
<li><a href="">HISTO</a>Birkbeck Crystallography Server on MHC
<li><a href="">Survey of the computing environment for visualizing virus structure</a>
<li><a href="">Scientific Visualisation & Graphics</a>
<li><a href="">Cambridge Crystallography Data Centre</a>
<li><a href="">Crystallographic Information</a>
<a name="OSAST"><h2>On-line sequence analysis and search tools</h2>
<li><a href="">Blast Search (for Mosaic 2.x users only)</a>
<li><a href="">Blocks WWW server</a>
<li><a href="">GenQest - The Q Server (Sequence comparison server)</a>
<li><a href="">BLITZ - EBI's ultra-fast protein database searches using MPsearch</a>
<li><a href="">PROSITE - Scan a sequence against PROSITE</a>
<li><a href="">Amino Acid Composition - Identify a protein by its amino acid composition</a>
<li><a href="">GuessProt - Get the SWISS-PROT proteins closest to a given pI and Mw</a>
<li><a href="">BCM Sequence Annotation Server</a>
<li><a href="">The ProDom Domain Databse</a>
<li><a href="">BioSCAN Online</a> (Submit Querries Interactively)
<li><a href="">Pedro's Research Tools</a> (exhaustive list of research tools)
<li><a href="">The biologists's Control Panel</a>
<li><a href="">Biologists Search Palette</a> (most usefull search engines 
for biological databases)
<a name="DOC"><H2>Documents/Bibliographies/Informations Search</H2>
<li><b>Search Bibliographies and Informations</b>
<li><a href="">Search Full Text MEDLINE</a> (simple search)
<li><a href="">Search MEDLINE</a> (Form based search)
<li><a href="gopher://">SeqAnalRef</A>
<li><a href="gopher://">Protein Science Diskettes and Abstracts</a>
<li><a href="">Bibliographies</a> A collection of computer bibliographies
<li><a href="gopher://">Joe Felsenstein's Bibliography</a> of Theoretical Population Genetics
<li><a href="">ncbi Staff Bibliography</a>
<li><a href="">Search bionet.journals.contents newsgroup</a>
<li><a href="">Computing Dictionary</a>
<li><a href="gopher://">Search Bionet and Info-GCG articles</a> (Indiana)
<li><a href="gopher://">Search Bionet articles</a> (IG)
<li><a href="">WWW in Biology</a> (
<li><a href="">BioMOO</a> the biologist meeting place
<li><a href="blastfasta.html">Read BLAST and FASTA search results</a> to retrieve corresponding 
bibliographies, using <a href="blast2html">blast2html</a> script
<li><a href="">Netfind : Search for e-mail addresses</a>
<li><a href="">Heterogeneous parallel processing</a>
<li><a href="">A Guide to Sequence Searching</a> (Hypertext document 
on sequence comparisons using blast and fasta programs)
<li><a href="">Blocks search</a> (results interpretations, references)
<li><a href="">Blocks maker</a>(help)
<li><a href="">Blocks</a> (ps papers)
<li><a href="">The Modular Arrangement of Proteins as Inferred from Analysis of Homology</a> 
(ProDom Article)
<li><a href="">Barton Group Bibliography</a> (sequence comparisons, multiple alignments,...)
<li><a href="">Online Papers</a> (Information Theory and Molecular Recognition)
<li><a href="">Computing for Molecular Biology</a> (strings, sequences, 
multiple alignments, evolutionary trees)
<li><a href="">CLUSTALW</a> (about the new version of clustalv)
<li><a href="">BioSCAN Publications</a> (pertaining to the BioSCAN project)
<li><a href="">The European Bioinformatics Institut (EBI) Databses</a> (1994 NAR paper)
<li><a name="CO"><b>Courses</b>
<li><a href="">Primer on Molecular Genetics</a>
<li><a href="">Glossary of Genetic Terms</a>
<li><a href="">NIH guide to molecular modeling</a>
<li><a href="">Special Topics in Virology</a>
<li><a href="">Representation of molecular Models</a> (molecular graphics) 
(ici en <a href="">Francais</a>)
<li><a href="">Geometric Aspects of Protein Structure and Function</a>
<li><a href="">Recombinant DNA Technology Course</a>
<li><a href="">Multimedia course on the history and uses of the Internet</a>
<li><a href="">Internet Resources for Biologists</a> (Teaching-Related)
<li><a href="">The Globewide Network Academy</a>
<li><a href="">Computers in Teaching Initiative</a>
<li><a href="">Biocomputing Course Resource List</a> (Bibliographies and 
Examples of Hypertext Books)
<li><a href="">An Internet ON LINE Biocomputing Course</a>
<li>Mathematics & Biology The Interface <a href="gopher://">text</a> <a href="">Hypertext</a>
<li><a href="">DOE Whitepaper on Bio Informatics</a>(JHU)
<li><a href="">GUIs in Bioinformatics Workshop</a>
<li><a href="">Mathematical support for Molecular Biology</a>
 (workshop abstract texts: alignments, phylogeny,..)
<li><a href="">The Major Histocompatibility Complex</a> (Review)
<li><a href="">Guide to Molecular Biology Databases</a> (Hypertext book)
<li><a href="">Swiss-Prot Usermanual</a>
<li><a href="">Swiss-Prot release notes</a>
<li>GCG Software Documentation <a href="">GenManual</a> (by Analysis Type) 
<a href="">GenHelp</a> (by Program Name)
<li><a href="">Gene-Linkage</a>
<li><a href="">Blast Notebook</a>
<li>PDB <a href="">PostScript</A> or <a href="">text</a>
<li><a href="">UNIX survival</a>
<li><a href="">Internet survival</a>
<li><a href="">UNIXhelp for users</a>
<li>Una Smith's <a href="Bioguide.html">A Biologist's Guide to the Internet</a>
<li><a href="">MBone Provides Audio and Video Across the Internet</a>
<li><b>Other documents</b>
<li><a href="SIS.html">Local menu Quick Reference</a> (under construction)
<li><a href="statistics.seqdb.html">Statistics on Sequence databases</a>
<li><a href="">Informations on sequence submission to EMBL</a>
<li><a href="embl.sequence.submission.form.html">Sequence Data submission FORM</a>
<li><a href="gopher://">Biology internet resources list</a> (in Stanford including informations on databases, software,...)
<li><a href="">General Information documents</a> (Organisms, E-mail servers, databases,software,...)
<li><a href="">Genethon Catalogue of Biosoftware</a>
<li><a href="">Biological Journals</a>
<li><a href="gopher://">Journal TOC</A>
<li><a href="">On-line journal information</a>
<li>Current PDB Newsletter in <a href="">PostScript</A> or <a href="">text</A>
<li><a href="">, vol1, Issue 1</a>
<li><a href="biobit.html">BIOBIT</a>
<li><b>WWW Virtual Libraries</b>
<li><a href="">Biosciences</a> (Compact introduction to Virtual Libraries)
<li><a href="">Biosciences</a> (exhaustive list of links)
<li><a href="">Computing</a>
<li><a href="">Science:Mathematics</a>
<li><a href="">Mathematics</a> (index)
<li><a href="">StatLib Index</a>
<li><a href="">Chemistry</a> (science)
<li><b>Research and Collaborative Projects</b>
<li><a href="">Collaborative Clickable Biology</a>
<li><a href="">Collaborative Biomolecular Tools (CBMT)</a>
<li><a href="">BITMED</a> Laboratory for Biological Informatics&Theoritical Medicine
<li><H2>more about the WWW</H2>
<li><a href="">Beginner's Guide to HTML</A> Document on how to create documents like this.
<li><A HREF="">Jughead, a catalog of WWW Resources</a>
<li><a href="">W3 and HTML Tools </a>
<li><a href="">HyperText Mark-up Language</a>
<li><a href="">Shell Script Archive</a>
<li><a href="">Best of the WEB 94</a>
<li><a href="">W3 Search Engines</a>
<li><a href="">NCSA Home Page</a>
<a name="REC"><H2>Recreation</H2>
<li><a href="math.jokes.html">Math Jokes</a>
<li><a href="">Visit Le Louvre and Paris</a>
<adress><p>Fredj Tekaia tekaia at</adress>


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