[repost] [Q] Promoter Sequence Analysis

Pedro M Coutinho pedro at iastate.edu
Thu Feb 16 15:52:15 EST 1995


Hi!

In article <1995Feb13.160849.25030 at comp.bioz.unibas.ch>, Shun'ichi Kuroda <skuroda at inherit.biosig.kobe-u.ac.jp> writes:
|> Dear Sirs:
|> 
|> I have a novel promoter sequence from human genome, of which 
|> length is about 2kbp and has enough transcriptional activity.  
|> However, it has been still unclear whether the promoter sequence 
|> contains known promoter motifs or not.  
|> If the database of the known promoter motifs is available, it will 
|> be helpful for us to construct the deletion mutants and understand 
|> the essential transcriptional region of the promoter sequence.
|> Therefore, I want to know the services for analyzing the promoter
|> sequence, which are on internet or distributed as commercial 
|> softwares. 
|>  Any comments will be appreciated.
|> Many thanks,
|> 
|> -- 
|> SHUN'ICHI KURODA
|> BIOSIGNAL RES CENTER
|> KOBE UNIVERSITY
|> NADA, KOBE, 657 JAPAN
|> E-mail: skuroda at inherit.biosig.kobe-u.ac.jp
|> URL:http://inherit.biosig.kobe-u.ac.jp/biosighome.html
|> Tel +81-78-803-1255   Fax +81-78-803-0994

You might find something useful in the following URLs, especially in PSORT.

EPD - Eucaryotic Promoter Database at EMBL-Heidelberg 
 http://www.embl-heidelberg.de/srs/srsc?-id||781260221_129.186.4.14||-info||EPD

PSORT - Predict Protein Sorting Signals Coded in Amino Acid Sequences at GenomeNet, Japan
 http://psort.nibb.ac.jp/

Good Luck!

Pedro Coutinho

--------------------------------- H2N-CH-CO-NH-CH-CO-...-NH-CH-COOH --
Pedro M. Coutinho  - Graduate Student  \        \            \        
IOWA STATE UNIVERSITY                   R1       R2           Rn      
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-- 
Pedro M Coutinho
pedro at iastate.edu



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