Site for searching database with user defined pattern?

Fergus Doherty Fergus.Doherty at nottingham.ac.uk
Wed Apr 4 03:32:40 EST 2001


Hello everybody,

I have used Pratt to generate "patterns" present in several proteins.  I
now want to see what other proteins contain these patterns, so I need to
yhrough them at a protein sequence database.  does anyone know of a WWW
site that will allow me to do this?  The "patterns" are Prosite-type
regular expressions e.g. FIL-x3-[VIL] etc, etc.

Thanks

-- 
Fergus Doherty,
School of Biomedical Sciences,
Nottingham University,

Fergus.Doherty at nottingham.ac.uk
0115 970 9366 (74-41366 internal)




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