Site for searching database with user defined pattern?

Aedin someone at
Mon Apr 9 10:44:27 EST 2001

Dear Fergus
You can also use the EMBOSS programs fuzzpro or patmatmotifs which both
accept a protein motif and  searches one or more protein sequences, or a
protein sequence database. To search a database enter database_name:*, for
example sw:* is swissprot. See the help for details.

A list of web interface to EMBOSS are available at, and include David
Bauer's implemtation of the PISE web interface at

You can also use access EMBOSS if you have an account with the HGMP

Best wishes
Aedin Culhane

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