RAT draft genome annotations fgenesh++

Victor Solovyev victor at softberry.com
Tue Jan 14 06:28:01 EST 2003


==== RAT draft genome annotations fgenesh++

 We're pleased to announce the release of fgenesh++ gene annotation on
 the Nov. 2002 rat assembly produced by the Baylor College of Medicine
 Rat Genome Sequencing Center and the Rat Genome Sequencing Consortium.

You can see/get gene annoation at UCSC Genome Browser on Rat Nov. 2002 Freeze


  http://genome.ucsc.edu/cgi-bin/hgGateway?org=Rat

or alternatively in GenomeExplorer: 
http://www.softberry.com/berry.phtml?topic=ratexp

Fgenesh++  annotated:

 43008 genes includes 28955 genes supported by NR proteins, among them 3763
genes correponding RAT refseq mRNA


ID and Name of similar protein added after ## in name line of fasta files 
*.pro
Refseq corresponding proteins additionally marked NM_..

Fgenesh++ predictions are based on complex fully automatic script that mapped
known Refseq RNA, predict genes and refine predicted genes that have protein 
support from other organisms.

Reference:
Solovyev V.V. (2001) Statistical approaches in Eukaryotic gene prediction.
 In Handbook of Statistical genetics (eds. Balding D. et al.),
 John Wiley & Sons, Ltd., p. 83-127.)

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