EC: Enzyme comission
Amos Bairoch
BAIROCH at CMU.UNIGE.CH
Wed Sep 11 14:06:00 EST 1991
<Does anyone out there know whether it is possible to inspect
<the current version of the EC (Enzyme Commision) numbers and names
<through electronic means? - or is it only available as a printed book?
<Is it possible to download EC-data from some source?
The 'ENZYME' data bank contains the following data for each type of
characterized enzyme for which an EC number has been provided:
- EC number.
- Recommended name.
- Alternative names (if any).
- Catalytic activity.
- Cofactors (if any).
- Pointers to the SWISS-PROT entrie(s) that correspond to the enzyme
(if any).
- Pointers to disease(s) associated with a deficiency of the enzyme (if
any).
The main source for the data in the ENZYME data bank comes from
recommendations of the Nomenclature Committee of the International Union
of Biochemistry (NC-IUB) [1,2,3]. A minor part of the data has been
extracted from the literature.
[1] Enzyme Nomenclature, NC-IUB, Academic Press, New-York, (1984).
[2] Supplement 1: corrections and additions.
Eur. J. Biochem. 157:1-26(1986).
[3] Supplement 2: corrections and additions.
Eur. J. Biochem. 179:489-533(1989).
Sample entry:
ID 2.3.1.43
DE PHOSPHATIDYLCHOLINE--STEROL ACYLTRANSFERASE.
AN LECITHIN--CHOLESTEROL ACYLTRANSFERASE.
AN LCAT.
AN PHOSPHOLIPID--CHOLESTEROL ACYLTRANSFERASE.
CA PHOSPHATIDYLCHOLINE + STEROL = STEROL ESTER +
CA 1-ACYLGLYCEROPHOSPHOCHOLINE.
CC -!- PALMITOYL, OLEOYL, AND LINOLEOYL CAN BE TRANSFERRED; A NUMBER OF
CC STEROLS, INCLUDING CHOLESTEROL, CAN ACT AS ACCEPTOR.
DI NORUM DISEASE; MIM:245900.
DI FISH-EYE DISEASE; MIM:136120.
DR P10480, GCAT$AERHY; P04180, LCAT$HUMAN; P16301, LCAT$MOUSE;
DR P18424, LCAT$RAT ;
//
How to download a copy of ENZYME:
1) If you have access to a computer that is linked to Internet, you can
obtain ENZYME from the following FTP servers:
Name : GenBank On-line Service
Address : genbank.bio.net (or 134.172.1.160)
Login : User=Anonymous Password=Your name
Directory: \pub\db\enzyme
Name : NCBI
Address : ncbi.nlm.nih.gov (or 130.14.20.1)
Login : User=Anonymous Password=Your name
Directory: \repository\ENZYME
2) If you have access to a computer which can send electronic mail to a
BITNET address, you can get ENZYME by electronic mail from the EMBL
file server.
To do so, you must send a message to the following address:
NETSERV at EMBL-HEIDELBERG.DE
Your message should contain the following lines:
get ENZYME:ENZYME.DAT
get ENZYME:ENZUSER.TXT
get ENZYME:ENZCLASS.TXT
3) ENZYME is also available on the SWISS-PROT tape or CD-ROM distributed
by the EMBL Data library.
Best regards
Amos
*****************************************************************************
* Amos Bairoch * Email: bairoch at cgecmu51.bitnet *
* Dept. Medical Biochemistry * or bairoch at cmu.unige.ch *
* C.M.U. * Tel : +(41 22) 61 84 92 *
* 1, rue Michel Servet ***********************************************
* 1211 Geneva 4 * Ground rule for laboratory workers: *
* Switzerland * When you don't know what you are doing, *
* * do it neatly. *
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