Newly computed PAM250 matrix

Mike Cherry 726-5955 cherry at opal.mgh.harvard.edu
Fri Jun 19 20:52:00 EST 1992


In article <LFK.92Jun19174846 at eastman1.mit.edu>, lfk at eastman1.mit.edu (Lee F. Kolakowski) writes...
>	Does anyone have this matrix on a computer yet? or perhaps the authors
>are listening and can post this matrix. It is mind numbing to type
>matrices in.

The PAM250 table from Gonnet, Cohen and Benner. Their figure 2.
(hope the long lines make it.)

I'll work on the GCG formated table this weekend. I've proof read this
twice, but of course if anyone finds an error please let me know.
OCR via OmniPage on a Macintosh did most of this.

Mike
------------------


C 11.5
S  0.1  2.2
T -0.5  1.5  2.5
P -3.1  0.4  0.1  7.6
A  0.5  1.1  0.6  0.3  2.4
G -2.0  0.4 -1.1 -1.6  0.5  6.6
N -1.8  0.9  0.5 -0.9 -0.3  0.4  3.8
D -3.2  0.5  0.0 -0.7 -0.3  0.1  2.2  4.7
E -3.0  0.2 -0.1 -0.5  0.0 -0.8  0.9  2.7  3.6
Q -2.4  0.2  0.0 -0.2 -0.2 -1.0  0.7  0.9  1.7  2.7
H -1.3 -0.2 -0.3 -1.1 -0.8 -1.4  1.2  0.4  0.4  1.2  6.0
R -2.2 -0.2 -0.2 -0.9 -0.6 -1.0  0.3 -0.3  0.4  1.5  0.6  4.7
K -2.8  0.1  0.1 -0.6 -0.4 -1.1  0.8  0.5  1.2  1.5  0.6  2.7  3.2
M -0.9 -1.4 -0.6 -2.4 -0.7 -3.5 -2.2 -3.0 -2.0 -1.0 -1.3 -1.7 -1.4  4.3
I -1.1 -1.8 -0.6 -2.6 -0.8 -4.5 -2.8 -3.8 -2.7 -1.9 -2.2 -2.4 -2.1  2.5  4.0
L -1.5 -2.1 -1.3 -2.3 -1.2 -4.4 -3.0 -4.0 -2.8 -1.6 -1.9 -2.2 -2.1  2.8  2.8  4.0
V  0.0 -1.0  0.0 -1.8  0.1 -3.3 -2.2 -2.9 -1.9 -1.5 -2.0 -2.0 -1.7  1.6  3.1  1.8  3.4
E -0.8 -2.8 -2.2 -3.8 -2.3 -5.2 -3.1 -4.5 -3.9 -2.6 -0.1 -3.2 -3.3  1.6  1.0  2.0  0.1  7.0
Y -0.5 -1.9 -1.9 -3.1 -2.2 -4.0 -1.4 -2.8 -2.7 -1.7  2.2 -1.8 -2.1 -0.2 -0.7  0.0 -1.1  5.1  7.8
W -1.0 -3.3 -3.5 -5.0 -3.6 -4.0 -3.6 -5.2 -4.3 -2.7 -0.8 -1.6 -3.5 -1.0 -1.8 -0.7 -2.6  3.6  4.1 14.2
    C    S    T    P    A    G    N    D    E    Q    H    R    K    M    I    L    V    F    Y    W



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