operon searching

Brian Foley btf at t10.lanl.gov
Tue Dec 17 19:39:41 EST 1996


Ronald Koder Jr wrote:
> 
> Given an e. coli gene sequence, how do you go about
> finding out if it's in an operon, and if so, what other
> genes are in there with it?  Short of sequencing around it
> yourself, of course.
> 
> Is there some kind of PDB-type database with this info?

Yes the GenBank/EMBL/DDJP gene sequence database.
Almost the complete genome of E.coli is in there.
And there are also complete genomes of other bacteria.

http://www.ncbi.nlm.nih.gov/  is the URL for GenBank

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|Brian T. Foley                btf at t10.lanl.gov                      |
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