PatSearch with TRANSFAC

Edgar Wingender ewi at
Fri Oct 18 08:21:18 EST 1996

Connected to the TRANSFAC database on transcription factors and their binding sites is now a pattern 
search engine (PatSearch) written by Holger Karas. Using this tool, you may use all sequence 
elements of the database to scan your sequence for potential TF binding sites. You have to choose 
between selected sequence libraries (vertebrates, insects, plants, fungi, consensi). The program 
output contains the position of the matches and an alignment of the matching sequences.

The URL is

Any suggestion for improvements will be appreciated!

Edgar Wingender 
on behalf of the TRANSFAC-Team.


Dr. Edgar Wingender
Molecular Bioinformatics of Gene Regulation
Mascheroder Weg 1
D-38124  Braunschweig

Phone    49 - 531 - 6181-427
FAX       49 - 531 - 6181-266

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