sequence analysis of 5' UTRs

Simon Andrews simon.andrews at bbsrc.ac.uk
Mon Apr 10 03:23:12 EST 2000


topalli at my-deja.com wrote:

> I have several kb of the 5' untranslated region of a gene.  Is there any
> software out there that can do some preliminary analysis of this
> sequence for me?  Is there any such resources in the Web.
> 
> Specifically I'd like to look for response elements, transcription factor
> binding sites, TATA, CAAT boxes and the like.  It seems like a pretty
> basic problem and a fairly mechanical process so I would be surprised if
> there were not publicly available resources.

You could try the following site, which has several tools which may
help;

http://transfac.gbf.de/index.html

Simon.




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