GenPept Release 76.0 available via anonymous ftp

Mark A. Gunnell GUNNELL at FCRFV2.NCIFCRF.GOV
Tue Apr 20 11:20:57 EST 1993


Subject:   GenPept Release 76.0 flat file format available via anonymous ftp
From:      fconvx.ncifcrf.gov
Directory: pub/genpept
Files:     gprel76.txt.Z, gpdat76.seq.Z
Rel. Date: 15-April-1993

     This is to announce the availability release 76.0 of the GenPept(R) 
(GenBank Gene Products) Database.  GenPept is provided in a format similar 
to that formerly distributed by GenBank(R) under the administration of 
Intelligenetics Inc.  The last official full release of GenPept was in June,
1992 (Release 72.0), with incremental releases made available via ftp from 
ncbi.nlm.nih.gov.  NCBI also continues to provide a GenPept datafile pre-
formatted for use with the Pearson & Lipman Fasta program.  This GenPept 
release IS _NOT_ AN OFFICIAL RELEASE FROM THE NCBI-GENBANK, but an attempt to 
provide a data file compatible with other existing software products.  An 
example entry is shown below:


-------------------------------------------------------------------------------
LOCUS       ABCAARAA_1
DEFINITION  A.aceti acetic acid resistance protein (aarA) gene, complete
            cds. Acetic acid resistance protein; (aarA).
DATE        15-SEP-1990
ACCESSION   M34830
ORGANISM    Acetobacter aceti Prokaryotae; Gracilicutes; Scotobacteria;
            Aerobic rods and cocci; Azotobacteraceae.
COMMENT     Nucleic Acid Features translated to generate this entry:
            CDS 185..1495 /note="acetic acid resistance protein; (aarA)"
            /codon_start=1
WEIGHT      48196.10
LENGTH      436
ORIGIN      Translated using phase 1
        1 MSASQKEGKL STATISVDGK SAEMPVLSGT LGPDVIDIRK LPAQLGVFTF DPGYGETAAC
       61 NSKITFIDGD KGVLLHRGYP IAQLDENASY EEVIYLLLNG ELPNKVQYDT FTNTLTNHTL
      121 LHEQIRNFFN GFRRDAHPMA ILCGTVGALS AFYPDANDIA IPANRDLAAM RLIAKIPTIA
      181 AWAYKYTQGE AFIYPRNDLN YAENFLSMMF ARMSEPYKVN PVLARAMNRI LILHADHEQN
      241 ASTSTVRLAG STGANPFACI AAGIAALWGP AHGGANEAVL KMLARIGKKE NIPAFIAQVK
      301 DKNSGVKLMG FGHRVYKNFD PRAKIMQQTC HEVLTELGIK DDPLLDLAVE LEKIALSDDY
      361 FVQRKLYPNV DFYSGIILKA MGIPTSMFTV LFAVARTTGW VSQWKEMIEE PGQRISRPRQ
      421 LYIGAPQRDY VPLAKR
//
-------------------------------------------------------------------------------
                Sample entry from GenPept flat file.

This format of the data is suitable as an input data file for the GCG
program GenBankToGCG/GENPEPT.  Compatibility with other software has not
been tested.

If you have questions or comments concerning this data file, please contact:
-------------------------------------------------------------------------------
Mark A. Gunnell                   | Internet: gunnell at ncifcrf.gov
Sci. Applications Analyst         | Bitnet:   gunnell%ncifcrf.gov at cunyvm.bitnet
Biomedical Supercomputer Center   | Phone:   (301) 846-5779
PRI/DynCorp                       |
NCI-FCRDC                         |
PO Box B, Bldg 430                |
Frederick, MD 21702-1201  USA     |
===============================================================================

GenPept (R) is a registered trademark of the U.S. Department of Health and
Human Services for the GenBank Gene Products Data Bank.

GenBank (R) is a registered trademark of the U.S. Department of Health and
Human Services for the Genetic Sequence Data Bank.



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