Schedule of Intl. Conference on Bioinformatics, Supercomputing ...
Hwa Lim
hlim at ds12.scri.fsu.edu
Tue Apr 28 15:45:02 EST 1992
Dear Friends,
CONFERENCE SCHEDULE AND TITLES OF ORAL PRESENTATIONS
----------------------------------------------------
The Second International Conference on
Bioinformatics, Supercomputing & Complex
Genome Analysis
June 4--7, 1992
The TradeWinds Hotel
St. Petersburg Beach
Florida
USA
Keynote Speech: 45 minutes
Regular Talk: Approx. 25 minutes
Half an hour coffee break during each session
Each Session Chair will present a 5-minute introduction
Reception: June 3, 1992 Evening
Photo session: June 5, 1992
Banquet: June 5, 1992 Evening
June 4, 1992, (Thursday)
========================
Morning Session: 8:30am--12:30pm
================================
8:15--9:00 Keynote Speaker:
Dr. Robert Robbins (Director, Welch Laboratory, MD, USA)
"Genome Informatics: Requirements and Challenges"
LINGUISTICS APPROACHES (Chair: Sarah Barron)
______________________ _____________________
9:00--9:30 Toni Kazic (Mathematics & Computer Science, Argonne National
Laboratory, USA)
"Reasoning about Biochemical Compounds and Processes"
9:30--10:00 Ezat Karimi (CHPC, University of Texas, USA)
"GenEng: A Dialogue Based Natural Language Interface to
GenBank"
10:00--10:30 Pavel Pevzner (Math, USC, USA)
"DNA Linguistics, Overlapping Words Paradoxes and Best Bet for
Simpletons"
10:30-11:00 COFFEE BREAK
11:00--11:30 David Searls (University of Pennsylvania School of Medicine, USA)
"The Structural Linguistics of DNA"
11:30--12:00 Ed Trifonov (Weizmann Institute, ISRAEL)
"DNA as a Language"
12:00--12:30 A. Konopka (NCI/DCBDC, NIH, USA)
"Aspects of Biomolecular Cryptology"
12:30--1:45 LUNCH
Afternoon Session: 2:00pm--6:00pm
=================================
1:45--2:30 Keynote Speaker:
Dr. Charles Cantor (Principal Scientist, DOE Genome Program & LBL,
Berkeley, USA)
"New Approaches for More Rapid Genome Analysis"
MAPPING AND SEQUENCING I (Chair: Patrick Gillevet)
________________________ _________________________
2:30--3:00 Eric Green (Washington University, USA)
"Strategies for Constructing Long-range Physical Maps of Human
Chromosomes Using Yeast Artificial Chromosomes (YACS)"
3:00--3:30 Mark Adams (NINDS, NIH, USA)
"Analysis of Expressed Sequence Tags from Human Brain"
3:30--4:00 Ben Koop (Caltech, USA)
"Comparison of the Human and Mouse Cdelta/Calpha Region (95kb)
in T-Cell Receptor alpha Locus"
4:00--4:30 COFFEE BREAK
4:30--5:00 R. Drmanac (ANL, USA)
"SBH and Complex Genome Sequencing: Integration of the Global
and Targeted Approaches"
5:00--5:30 V. Vincek (School of Medicine, University of Miami, USA)
"From Genetic toward Physical Map of Mouse Chromosome 17"
5:30--6:00 Bruno Lacroix (G\'en\'ethon, Paris, FRANCE)
"Physical Mapping of the Human Genome: Computational Aspects"
June 5, 1992 (Friday)
=====================
Morning Session: 8:30am--12:30pm
================================
GENOME MAP (Chair: James Fickett)
__________ ______________________
8:30--9:00 Christian Burks (Group Leader, T-10, LANL, USA)
"Exploring Integration of Human Chromosome 16 Maps"
9:00--9:30 Janan Eppig (P.I., Jackson Laboratory, USA)
"Genome Data Integration and Display: The Encyclopadia of the
Mouse Genome"
9:30--10:00 Michael Cinkosky (T-10, LANL, USA)
"Building Integrated Genome Maps with SIGMA"
10:00--10:30 COFFEE BREAK
10:30--11:00 Stan Letovsky (Letovsky Associate, New Haven, USA)
"CPROP: A Rule-Based Program for Constructing Genetic Maps"
11:00--11:30 David Sankoff (Math Research Center, Univ. of Montreal, CANADA)
"Evolutionary Inference Based on Genome Rearrangements"
12:00--1:45 LUNCH
Afternoon Session: 2:00pm--6:00pm
=================================
MAPPING AND SEQUENCING II (Chair: R. Drmanac)
_________________________ ___________________
2:00--2:30 F. Fairfield (T-10, LANL, USA)
"Simulation of Physical Mapping of DNA"
2:30--3:00 R. Crkvenjakov (Biology, ANL, USA)
"Sequencing by Hybridization (SBH) is a Working Methodology:
340bp of Unknown DNA Determined without Error in a Blind Test"
3:00-3:30 Patrick Gillevet (Director, Harvard Genome Lab., USA)
"Multiplex Genomic Walking: Integration of the Wet Lab and
Computer Lab into a Single Prototyping Environment"
3:30--4:00 Richard Gibbs (Genetics, Baylor, USA)
"Sequencing and Re-sequencing Human DNA"
4:00--4:30 COFFEE BREAK
4:30--5:00 R. L. Charlebois (Dept. of Bio., Univ. Ottawa, CANADA)
"Physical Mapping of Genomes Using the Landmark Strategy"
5:00--5:30 G. M. Church (Harvard Medical School, USA)
"Automated Multiplex Sequencing and Large Scale Computational
Methods"
5:30--6:00 Mark J. Borodovsky (School of Biology, Georgia Institute
of Technology Atlanta, USA)
"Prediction of Gene Locations Using DNA Markov Chain Models"
June 6, 1992 (Saturday)
=======================
Morning Session: 8:30am--12:30pm
================================
DATABASES (Chair: Michael Waterman)
_________ _________________________
8:30--9:00} Toshihisa Takagi (Human Genome Center, University of Tokyo, JAPAN)
"ODS: Overlapping Oligonucleotide Database with Deductive Engine
for Signal Sequence Search"
9:00--9:30 Yuri Lysov (Head, Moscow-HUGO Bioinformatics Center, Russian Acad.
Sc., RUSSIA)
"Theoretical Aspects of Sequencing by Hybridization"
9:30--10:00 Chris Fields (NINDS, NIH, USA)
"Management and Distribution of EST Sequence and Mapping Data"
10:00--10:30 James Fickett (Bioinformation, LANL, USA)
"Genome Mapping: The Data Management Issues"
10:30--11:00 COFFEE BREAK
11:00--11:30 Raymond Ochs (Mt. Sinai Medical Center, USA)
"A Graphical Environment for a Computerized Metabolic Map"
11:30--12:00 George Michaels (Div. Comput. Res. & Tech, NIH, USA)
"Comparative Analysis of Chromosomes"
12:00--12:30 Stanley Su (University of Florida, USA)
"An Object-oriented Knowledge Base Management Technology
for Supporting Scientific Research and Applications"
12:30--1:45 LUNCH
Afternoon Session: 2:00pm--6:00pm
=================================
APPLICATIONS OF NEURAL-NET (Chair: Michael Liebman)
__________________________ ________________________
2:00--2:30 Michael Liebman (Bioinformation, Amoco Technology Co., USA)
"Application of Neural Networks to the Analysis of Structure and
Function in Biologically Active Macromolecules"
2:30--3:00 Cathy Wu (University of Texas Health Center/Tyler, USA)
"Protein Classification Artificial Neural System: A Filter
Program for DataBase Search"
3:00--3:30 George Wilcox (University of Minnesota, USA)
"Prediction of Protein Folds from Sequence using a Neural Network
Trained with Sequence-Structure Associations"
3:30--4:00 Alan Lapedes (T-10, LANL, Los Alamos, USA)
"Protein Structure/Function: Neural Networks and Information
Theory"
4:00--4:30 COFFEE BREAK
4:30--5:00 David Waltz (Thinking Machine Corp., USA)
"Application of Massively Parallel Methods to Protein Secondary
Structure Prediction"
5:00--5:30 Jude Shavlik (Computer Science, University of Wisconson, USA)
"Using Artificial Neural Networks to Refine Existing Biological
Knowledge"
5:30--6:00 Su-Shing Chen (Director, Knowledge Models and Cognitive
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