EMBL database net resource [bionet.announce]
Reinhard Doelz
doelz at comp.bioz.unibas.ch
Mon Jun 15 12:36:47 EST 1992
The new SWISS-PROT and EMBL databases are now available on the network.
GOPHER entry:
bioftp.unibas.ch port 70
1. About Gopher, and this bioftp site/
2. DIBUG [Discover Insight Biosym User Group] Mailing list/
--> 3. EMBNet BioInformation Resource Switzerland/
4. Molecular Biology Archive List.
5. and if you have suggestions or problems....
6. bioftp server: READ ME FIRST.
7. development site of GOPHER (U Minnesota)/
8. other Gopher and Information Servers (Minnesota directory)/
1. About EMBnet.
--> 2. Database/
3. Hints/
4. Info on this EMBNet Information Resource.
5. Other EMBnet Hosts/
6. Software/
--> 1. EMBL CD-ROM release/
2. ENZYME database/
3. FlyBase /
4. GENBANK sequence archive in Indiana (USA)/
5. NEW since last EMBL release/
6. PROSITE dictionary/
7. SWISS-PROT CD-ROM release/
8. UPDATES since last EMBL release/
--> 1. Simultaneous search in all XXEMBL XEMBL EMBL sections <?>
2. search for a key word in FUN section <?>
3. search for a key word in INV section <?>
4. search for a key word in MAM section <?>
5. search for a key word in ORG section <?>
6. search for a key word in PHG section <?>
7. search for a key word in PLN section <?>
8. search for a key word in PRI section <?>
9. search for a key word in PRO section <?>
10. search for a key word in ROD section <?>
11. search for a key word in SYN section <?>
12. search for a key word in UNA section <?>
13. search for a key word in VRL section <?>
14. search for a key word in VRT section <?>
FTP resources for those who need the data that urgent that they cannot wait for
their CD-ROM subscription to be delivered:
----------------------------------------------------------------------------------
EUROPE: bioftp.unibas.ch, [131.152.8.1]
directory archive_data/brand_new/embl (flat file format)
directory archive_data/seq_data/embl (gcg/PIR format)
Service provider is Reinhard Doelz (EMBnet Switzerland), embnet at comp.bioz.unibas.ch
Distributer information is in the EMBL_SWISSPROT_RELEASE file of the
archive_data/brand_new directory.
----------------------------------------------------------------------------------
----------------------------------------------------------------------------------
US: amber.mgh.harvard.edu [132.183.190.26]
directory embl
Service provider is Mike Cherry, cherry at frodo.mgh.harvard.edu
Distributer information is in the 00000GCG_SAVESETS.TXT and the
000README.TXT of the embl directory.
----------------------------------------------------------------------------------
The release notes covering the originator notice should be carefully studied with
respect to the details. The following contains header page information.
EMBL Data Library
Nucleotide Sequence Database
Release Notes
Release 31, June 1992
European Molecular Biology Laboratory
Postfach 10.2209
D-6900 Heidelberg
Federal Republic of Germany
Telephone: +49-6221-387258
Electronic mail: DataLib at EMBL-Heidelberg.DE
The EMBL database was frozen to make Release 31 on 25 May 1992. The release
contains 72,481 sequence entries comprising 94,390,065 nucleotides. This
represents an increase of about 14% over Release 30. A breakdown of Release
31 by taxonomic division is shown below:
Division Entries Nucleotides
----------------- ------- -----------
Bacteriophage 784 1013992
Fungi 3129 6043027
Invertebrates 6344 8588325
Organelles 2400 3729702
Other Mammals 2661 3574243
Other Vertebrates 3336 3995908
Plants 3756 5330636
Primates 16172 17512985
Prokaryotes 9516 15319602
Rodents 12806 14116618
Synthetic 1275 1008738
Unclassified 2604 2251376
Viruses 7698 11904913
----------------- ------- -----------
Total 72481 94390065
New and updated sequence data from the latest GenBank and DDBJ releases have
been incorporated into this release. Entries whose primary accession numbers
begin with the letter D have been created and annotated by DDBJ.
PS:
Special thanks to Peter Stoehr in Heidelberg who wrote me a tape
this time as I visited Heidelberg last week.
Regards
Reinhard
+----------------------------------+-------------------------------------+
| Dr. Reinhard Doelz | RFC doelz at urz.unibas.ch |
| Biocomputing | DECNET 20579::48130::doelz |
|Biozentrum der Universitaet | X25 022846211142036::doelz |
| Klingelbergstrasse 70 | FAX x41 61 261- 6760 or 267- 2078
| CH 4056 Basel | TEL x41 61 267- 2076 or 2247 |
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