Postscript file of DIMACS Implementation Challenge in Comp. Biology

Sampath Kannan kannan at central.cis.upenn.edu
Fri Sep 2 12:30:20 EST 1994


I would like to post the following call for participation on bio-net.

Sampath Kannan
Publicity chair: DIMACS Special Year on Mathematical Support for Molecular Biology.

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%%EndProlog
%%BeginSetup
%%Feature: *Resolution 300
TeXDict begin

%%EndSetup
%%Page: 1 1
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Fd(The)27 b(F)-7 b(ourth)28 b(DIMA)n(CS)f(In)n(ternational)284
138 y(Algorithm)f(Implem)n(en)n(tation)e(Challenge:)218 265
y(Tw)n(o)j(Problems)e(in)i(Computational)e(Biology:)65 356
y(F)-7 b(ragmen)n(t)25 b(Assem)n(bly)f(and)j(Genome)e(Rearrangemen)n(ts)101
503 y Fc(In)18 b(conjunction)h(with)g(its)f(Sp)q(ecial)i(Y)l(ear)e(on)g
(Mathematical)g(Supp)q(ort)h(for)e(Molecular)i(Biology)l(,)h(the)30
557 y(Cen)o(ter)15 b(for)g(Discrete)h(Mathematics)g(and)g(Theoretical)g
(Computer)f(Science)j(\(DIMA)o(CS\))d(in)o(vites)h(partic-)30
611 y(ipation)h(in)h(an)e(in)o(ternational)i(Implemen)o(tation)g(Challenge)g
(fo)q(cussed)f(on)f(t)o(w)o(o)g(problems)h(from)f(Compu-)30
665 y(tational)g(Molecular)h(Biology:)22 b(F)l(ragmen)o(t)15
b(Assem)o(bly)h(and)g(Genome)g(Rearrangmen)o(ts.)22 b(The)16
b(Implemen-)30 719 y(tation)i(Challenge)i(will)g(tak)o(e)e(place)h(b)q(et)o
(w)o(een)g(Septem)o(b)q(er)g(1994)e(and)i(August)f(1995.)29
b(P)o(articipan)o(ts)18 b(are)30 773 y(in)o(vited)i(to)e(carry)g(out)g
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(to)f(presen)o(t)h(researc)o(h)30 827 y(pap)q(ers)13 b(at)g(a)g(DIMA)o(CS)f
(w)o(orkshop)g(to)h(b)q(e)h(held)g(in)g(Septem)o(b)q(er)f(1995.)18
b(A)c(refereed)f(w)o(orkshop)f(pro)q(ceedings)30 881 y(will)17
b(b)q(e)f(published.)30 961 y Fb(Researc)o(h)i(Pro)s(jects.)44
b Fc(There)16 b(still)h(is)f(a)g(large)g(gap)f(in)i(Computational)e
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b Fb(F)l(ragmen)o(t)19 b(Assem)n(bly)e Fc(is)j(the)30 1122
y(problem)g(of)e(reconstructing)h(a)g(DNA)f(sequence)i(kno)o(wing)f(only)g
(the)g(sequences)h(of)f(man)o(y)f(o)o(v)o(erlapping)30 1176
y(fragmen)o(ts)e(of)h(it.)27 b Fb(Genome)18 b(Rearrangmen)o(ts)c
Fc(is)k(the)g(problem)g(of)f(comparing)g(t)o(w)o(o)f(orders)h(of)g(genes)30
1230 y(under)f(the)g(assumption)f(that)g(one)h(order)f(is)h(transformed)e(in)
o(to)i(another)f(b)o(y)g(a)g(series)h(of)f(rearrangmen)o(ts.)30
1284 y(F)l(or)i(b)q(oth)h(problems)g(there)g(exist)g(algorithms)g(and)g(soft)
o(w)o(are)e(that)h(in)i(the)f(case)f(of)h(fragmen)o(t)e(assem)o(bly)30
1338 y(is)h(widely)h(used.)24 b(Man)o(y)16 b(forms)g(of)g(con)o(tributions)h
(are)f(conceiv)m(able.)26 b(P)o(articipan)o(ts)16 b(ma)o(y)g(wish)h(to)f
(imple-)30 1392 y(men)o(t)f(algorithms)h(or)f(use)h(existing)g(implemen)o
(tations)h(for)e(ev)m(aluation;)i(participan)o(ts)f(ma)o(y)f(dev)o(elop)h
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1500 y(derlying)g(biological)g(problem)f(in)h(a)e(new)g(manner)h(and)f
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1554 y(algorithms)d(and)g(implemen)o(tation)i(o)o(v)o(er)d(existing)i(ones.)
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