ANNOUNCE: NRSub release 9 availability
Guy Perriere
perriere at biomserv.univ-lyon1.fr
Sun Sep 29 12:22:47 EST 1996
NRSub Release 9 (September 1996)
The release 9 of NRSub (the Non-Redundant Bacillus subtilis data
base) is now available through anonymous FTP at:
<ftp://biom3.univ-lyon1.fr/pub/nrsub/>
or
<ftp://ftp.nig.ac.jp/pub/db/nrsub/>
The distribution includes:
- The flat version of NRSub in EMBL format (file NRSub.dat or
NRSub.dat.Z).
- The NRSub data base under ACNUC for UNIX computers. This part
includes the sources of the query program for line mode use
(file NRSub.r9.tar.Z).
- The binaries of the Query_win program for browsing the data
base. The architectures supported are: Sun under SunOS
(query_win.SUN.Z) or Solaris (query_win.SOL.Z), IBM RS/6000
(query_win.RS6000.Z), DEC Alpha (query_win.ALPHA.Z), Silicon
Graphics (query_win.SGI.Z), HP/UX (query_win.HP.Z).
- The NRSub data base under ACNUC for Macintosh microcomputers.
(file NRSub.r9.sea.hqx). This archive includes binaries of
Query_win for 680x0 and PowerPC Macintoshes.
It is also possible to access NRSub through two World Wide Web
servers located at:
<http://acnuc.univ-lyon1.fr/nrsub/nrsub.html>
or
<http://ddbjs4h.genes.nig.ac.jp/>
NRSub release 9 contains a total of 214 contigs (59 composite).
All these sequences are chromosomal (plasmidic sequences are
removed) and totalize 1,983,150 bp. This represents approxi-
matively 47% of the entire Bacillus subtilis chromosome
consisting of about 4,165 kbp. These sequences contain 1855 CDS
(913 ORFs), 78 tRNAs and 31 rRNAs. Also, 534 bibliographic
references can be accessed.
If you use NRSub in a published work, please cite the
following reference:
Perriere, G., Moszer, I., and Gojobori, T. (1996) NRSub: a non-
redundant data base for Bacillus subtilis. Nucleic Acids Res.,
24, 41-45.
Guy Perriere
Laboratoire de Biometrie, Genetique et
Biologie des Populations, URA CNRS 5558
Universite Claude Bernard - Lyon 1
43, bd. du 11 Novembre 1918
69622 Villeurbanne Cedex
France
Email: perriere at biomserv.univ-lyon1.fr
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