InterPro release 1.0
Alexander Kanapin
alex at ebi.ac.uk
Thu Mar 30 04:21:41 EST 2000
InterPro release 1.0
InterPro is an Integrated Resource of Protein Domains
and Functional Sites. InterPro rationalises the complementary
efforts of the PROSITE, PRINTS, Pfam and ProDom database projects.
Each combined InterPro entry includes functional descriptions and
literature references, and links are made back to the relevant member
database(s), allowing users to see at a glance whether a particular
family or domain has associated patterns, profiles, fingerprints, etc.
Merged and individual entries (i.e., those that have no counterpart
in the companion resources) are assigned unique accession numbers.
Each InterPro entry lists all the matches against SWISS-PROT and TrEMBL
InterPro release 1.0 (March 2000) contains 2990 entries,
representing 556 domains, 2373 families, 47 repeats,
and 14 post-translational modification sites. Overall,
there are 823000 InterPro hits from 307361 SWISS-PROT + TrEMBL
protein sequences. A complete list is available from the ftp
site.
The release was build using the following database versions:
Database Version Entries Date
--------- ------- ------- ------
SWISS-PROT 38 82229 15-DEC-1999
TrEMBL 12 225132 15-DEC-1999
PROSITE 16.0 1370 01-APR-1999
prelim. profiles - 241 10-FEB-1999
Pfam 5.0 2008 11-JAN-2000
PRINTS 25.0 1260 07-JAN-2000
ACCESS/DATA DISTRIBUTION
========================
FTP server: ftp://ftp.ebi.ac.uk/pub/databases/interpro/
Web site : http://www.ebi.ac.uk/interpro
--
_______________________________________________________________________
Alexander A. Kanapin, Ph.D. | European Bioinformatics Institute
+44 (0)1223 49 4610 | Wellcome Trust Genome Campus,
Hinxton
+44 (0)1223 49 4468 (fax) | Cambridgeshire CB10 1SD, United
Kingdom
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