Pfam release 6.5

Mhairi Marshall mm1 at
Wed Jul 18 18:13:49 EST 2001

               ANNOUNCING PFAM RELEASE 6.5

Pfam is a collection of protein domain family alignments which were
constructed semi-automatically using profile hidden Markov models.
Pfam families contain functional annotation and cross-references to
other databases.  Query sequences can be searched against the Pfam
library of profile hidden Markov models at the web sites below.

Pfam 6.5 contains 2929 families.  69% of proteins in SWISSPROT 39
and TrEMBL 14 have at least one match to a Pfam family.

For interactive access and searching see URLs


The release is also available in flat file by anonymous ftp:


The Pfam HMM library is compatible with HMMER2 software, available

and also the Wise2 software, available from


The Pfam consortium

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