RAT draft genome annotations fgenesh++
Victor V. Solovyev
solovyev at bcm.tmc.edu
Mon Jan 13 01:43:49 EST 2003
==== RAT draft genome annotations fgenesh++
We're pleased to announce the release of fgenesh++ gene annotation on
the Nov. 2002 rat assembly produced by the Baylor College of Medicine
Rat Genome Sequencing Center and the Rat Genome Sequencing Consortium.
You can see/get gene annoation at UCSC Genome Browser on Rat Nov. 2002 Freeze
or alternatively in GenomeExplorer: http://www.softberry.com/berry.phtml?topic=ratexp
43008 genes includes 28955 genes supported by NR proteins, among them 3763
genes correponding RAT refseq mRNA
ID and Name of similar protein added after ## in name line of fasta files *.pro
Refseq corresponding proteins additionally marked NM_..
Fgenesh++ predictions are based on complex fully automatic script that mapped
known Refseq RNA, predict genes and refine predicted genes that have protein
support from other organisms.
Solovyev V.V. (2001) Statistical approaches in Eukaryotic gene prediction.
In Handbook of Statistical genetics (eds. Balding D. et al.),
John Wiley & Sons, Ltd., p. 83-127.)
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