Brugia EST Dataset hits 10,000

Mark Blaxter mark.blaxter at ed.ac.uk
Fri Aug 22 11:07:53 EST 1997


Dear Colleagues

The WHO/TDR sponsored Filarial Genome Project has now deposited over 10,000
ESTs in Genbank.

These expressed sequence tags represent single pass sequence reads from
essentially randomly-picked cDNA clones. The clones come from a set of cDNA
libraries which span the filarial lifecycle: new additions to the libraries
sampled include:
	* Adult female
	* Second stage (mosquito-derived) larvae
	* Third stage larvae
	  isolated 6 days after infection of the mammalian host
These libraries, and all others used in the project, are available from the
Filarial Genome Resource Center (genome at smith.edu).

We estimate that we have identified between 4 and 5,000 different genes by
this EST approach. In addition to identifying many homologues of genes with
immediate potential as drug targets or vaccine components, there is a vast
array of previously unidentified genes which have interesting expression
patterns (judged by their representation in different libraries) and
intriguing homologies. We believe this dataset should be of immediate
interest not only to filarial biologists, but also all others working on
parasitic nematodes and free-living models such as C. elegans.

All the clones are freely available from the sequencing labs (either
genome at smith.edu or mark.blaxter at ed.ac.uk).

The sequences are available in the dbEST division of Genbank, and in the
EMBL and DDBJ databases too. Through the www dbEST can be accessed at the
URL
http://www.ncbi.nlm.nih.gov/dbEST/index.html

The filarial genome project WWW site is at
http://helios.bto.ed.ac.uk/mbx/fgn/filgen1.html
Descriptions of the libraries, and of how to search the dataset are
available there.

The Filarial EST program is funded by WHO/TDR, the MRC and the Edna
McConnell Clark Foundation. The ESTs were generated by a collaboration
between the labs of K. Jayaraman (Madras, India), R. Ramzy (Cairo, Egypt),
S. Williams (Northampton, USA), B. Slatko (NEB, MA, USA), A. Scott (JHU,
Baltimore, USA), M. Blaxter (Edinburgh, Scotland) and S. Jones & L. Baron
(Sanger Centre, UK).

Mark Blaxter

Filarial Genome Project Secretary


______________________________________
Dr. Mark Blaxter   email  Mark.Blaxter at ed.ac.uk
Institute of Cell, Animal and Population Biology
Ashworth Laboratories, King's Buildings
University of Edinburgh,  West Mains Road
EDINBURGH  EH9 3JT,  United Kingdom
phone: (+44) 131 650 6760  Fax :...650 5450
see  http://helios.bto.ed.ac.uk/mbx/blaxter/blaxlab.html





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