------------------------------ Start of body part 1
After checking the codon usage table I recently posted, I have noticed
some sequences have been included twice as a consequence of having taken in
consideration both the genomic and the cDNA sequences at the same time.
I have excluded one of these sequences, and a corrected version of
the table is posted. Notice no significant changes in relation to the old
table are seen. But this table is not biased at all, and is a work better done.
------------------------------ Start of body part 2
CODONFREQUENCY September 7, 1993 18:38
From an existing codon frequency file: d10542.cod FileCheck: 8270
CODONFREQUENCY July 22, 1993 12:37
>From : d10542.seq check: 2314 from: 32 to: 1948
LOCUS CREGLE 2379 bp ss-mRNA PLN 12-SEP-1992
DEFINITION C. reinhardtii mRNA for gamete lytic enzyme (GLE), complete cds.
ACCESSION D10542 D90503
KEYWORDS GLE preproprotein; calcium binding; . . .
From an existing codon frequency file: d90206.cod FileCheck: 8368
CODONFREQUENCY July 21, 1993 13:08
>From : d90206.seq check: 5779 from: 592 to: 687
continuing on: d90206.seq check: 5779 from: 950 to: 999
continuing on: d90206.seq check: 5779 from: 1185 to: 1239
continuing on: d90206.seq check: 5779 from: 1455 to: 1529
continuing on: d90206.seq check: 5779 from: 1850 to: 1904 . . .
From an existing codon frequency file: j02774.cod FileCheck: 9251
CODONFREQUENCY July 21, 1993 13:03
>From : j02774.seq check: 4177 from: 10 to: 456
LOCUS CREC552 685 bp ss-mRNA PLN 31-DEC-1987
DEFINITION C.reinhardtii pre-apocytochrome c-552 mRNA.
ACCESSION J02774
KEYWORDS apocytochrome. . . .
From an existing codon frequency file: j05524.cod FileCheck: 1502
CODONFREQUENCY July 21, 1993 13:01
>From : j05524.seq check: 3475 from: 22 to: 459
LOCUS CREAPCYN 577 bp ss-mRNA PLN 15-SEP-1990
DEFINITION C.reinhardtii apoplastocyanin (PC6-2) mRNA, complete cds.
ACCESSION J05524
KEYWORDS apoplastocyanin. . . .
From an existing codon frequency file: k03281.cod FileCheck: 8467
CODONFREQUENCY July 26, 1993 14:50
>From : k03281.seq check: 5419 from: 133 to: 156
continuing on: k03281.seq check: 5419 from: 305 to: 449
continuing on: k03281.seq check: 5419 from: 708 to: 932
continuing on: k03281.seq check: 5419 from: 1070 to: 2007
LOCUS CRETBBB 2461 bp ds-DNA PLN 24-NOV-1992 . . .
From an existing codon frequency file: m11448.cod FileCheck: 3674
CODONFREQUENCY July 26, 1993 14:49
>From : m11448.seq check: 6788 from: 144 to: 188
continuing on: m11448.seq check: 6788 from: 425 to: 647
continuing on: m11448.seq check: 6788 from: 866 to: 1953
LOCUS CRETBA2A 2150 bp ds-DNA PLN 02-MAR-1993
DEFINITION Chlamydomonas reinhardtii alpha-2 tubulin gene, complete cds. . . .
From an existing codon frequency file: m15187.cod FileCheck: 4131
CODONFREQUENCY July 22, 1993 12:40
>From : m15187.seq check: 2138 from: 154 to: 891
LOCUS CREOEE2A 1552 bp ss-mRNA PLN 15-MAR-1989
DEFINITION C.reinhardtii oxygen-evolving enhancer protein 2 (OEE2) mRNA,
complete cds.
ACCESSION M15187 . . .
From an existing codon frequency file: m20729.cod FileCheck: 1300
CODONFREQUENCY March 20, 1992 16:58
>From : M20728.Gb_Pl check: 3916 from: 285 to: 369
continuing on: M20728.Gb_Pl check: 3916 from: 722 to: 879
continuing on: M20728.Gb_Pl check: 3916 from: 954 to: 1034
continuing on: M20728.Gb_Pl check: 3916 from: 1241 to: 1305
continuing on: M20728.Gb_Pl check: 3916 from: 1456 to: 1495 . . .
From an existing codon frequency file: m24072.cod FileCheck: 7996
CODONFREQUENCY July 21, 1993 13:05
>From : m24072.seq check: 6643 from: 417 to: 491
continuing on: m24072.seq check: 6643 from: 648 to: 708
continuing on: m24072.seq check: 6643 from: 951 to: 1270
continuing on: m24072.seq check: 6643 from: 1517 to: 1822
LOCUS CRECABA 2290 bp ds-DNA PLN 15-DEC-1989 . . .
From an existing codon frequency file: m25916.cod FileCheck: 2367
CODONFREQUENCY July 26, 1993 15:20
>From : m25916.seq check: 6851 from: 143 to: 187
continuing on: m25916.seq check: 6851 from: 425 to: 647
continuing on: m25916.seq check: 6851 from: 845 to: 1932
LOCUS CRETBA1A 2246 bp ds-DNA PLN 02-MAR-1993
DEFINITION Chlamydomonas reinhardtii alpha-1 tubulin gene, complete cds. . . .
From an existing codon frequency file: m25918.cod FileCheck: 9363
CODONFREQUENCY July 26, 1993 15:23
>From : m25918.seq check: 8158 from: 161 to: 184
continuing on: m25918.seq check: 8158 from: 311 to: 455
continuing on: m25918.seq check: 8158 from: 815 to: 1039
continuing on: m25918.seq check: 8158 from: 1174 to: 2111
LOCUS CRETBBA 2668 bp ds-DNA PLN 24-NOV-1992 . . .
From an existing codon frequency file: m36123.cod FileCheck: 5797
CODONFREQUENCY July 22, 1993 12:47
>From : m36123.seq check: 6737 from: 28 to: 1155
LOCUS CREPHOSRI 1245 bp ss-mRNA PLN 15-AUG-1990
DEFINITION C.reinhardtii phosphoribulokinase mRNA, complete cds.
ACCESSION M36123
KEYWORDS phosphoribulokinase. . . .
From an existing codon frequency file: m62962.cod FileCheck: 5387
CODONFREQUENCY July 22, 1993 12:49
>From : m62962.seq check: 512 from: 51 to: 1277
LOCUS CRERBCOA 1693 bp ss-mRNA PLN 13-MAR-1991
DEFINITION C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
activase mRNA, complete cds.
ACCESSION M62962 . . .
From an existing codon frequency file: m67448.cod FileCheck: 1667
CODONFREQUENCY July 22, 1993 12:35
>From : m67448.seq check: 3430 from: 932 to: 1148
continuing on: m67448.seq check: 3430 from: 1284 to: 1396
continuing on: m67448.seq check: 3430 from: 1784 to: 1900
LOCUS CRECYTC6 2607 bp ds-DNA PLN 10-SEP-1991
DEFINITION C.reinhardtii cytochrome c6 gene, complete cds. . . .
From an existing codon frequency file: m73493.cod FileCheck: 7693
CODONFREQUENCY February 11, 1992 19:42
>From : Creatpc.Gb_Pl check: 2394 from: 27 to: 122
continuing on: Creatpc.Gb_Pl check: 2394 from: 208 to: 363
continuing on: Creatpc.Gb_Pl check: 2394 from: 517 to: 663
continuing on: Creatpc.Gb_Pl check: 2394 from: 931 to: 1042
continuing on: Creatpc.Gb_Pl check: 2394 from: 1751 to: 2316 . . .
From an existing codon frequency file: m87526.cod FileCheck: 5896
CODONFREQUENCY July 22, 1993 12:57
>From : m87526.seq check: 2466 from: 611 to: 715
continuing on: m87526.seq check: 2466 from: 868 to: 975
continuing on: m87526.seq check: 2466 from: 1171 to: 1217
continuing on: m87526.seq check: 2466 from: 1411 to: 1474
continuing on: m87526.seq check: 2466 from: 1762 to: 2023 . . .
From an existing codon frequency file: s44199.cod FileCheck: 1386
CODONFREQUENCY July 26, 1993 15:17
>From : s44199.seq check: 3753 from: 1088 to: 1696
LOCUS S44199 2242 bp DNA PLN 10-NOV-1992
DEFINITION class IV zygote specific cell wall hydroxyproline-rich glycoprotein
[Chlamydomonas reinhardtii, Genomic, 2242 nt]
ACCESSION S44199 . . .
From an existing codon frequency file: x04471.cod FileCheck: 3637
CODONFREQUENCY February 11, 1992 20:01
>From : Crerbcs1.Gb_Pl check: 4319 from: 406 to: 569
continuing on: Crerbcs1.Gb_Pl check: 4319 from: 708 to: 787
continuing on: Crerbcs1.Gb_Pl check: 4319 from: 1016 to: 1101
continuing on: Crerbcs1.Gb_Pl check: 4319 from: 1306 to: 1533
LOCUS CRERBCS1 2369 bp ds-DNA PLN 31-DEC-1987 . . .
From an existing codon frequency file: x04472.cod FileCheck: 2694
CODONFREQUENCY July 26, 1993 15:10
>From : x04472.seq check: 1364 from: 1143 to: 1306
continuing on: x04472.seq check: 1364 from: 1452 to: 1531
continuing on: x04472.seq check: 1364 from: 1861 to: 1946
continuing on: x04472.seq check: 1364 from: 2185 to: 2412
LOCUS CRRBCS2 2785 bp DNA PLN 28-FEB-1992 . . .
From an existing codon frequency file: x13495.cod FileCheck: 6435
CODONFREQUENCY February 12, 1992 09:29
>From : Crepsaf.Gb_Pl check: 8034 from: 19 to: 702
LOCUS CREPSAF 1227 bp ss-mRNA PLN 15-MAR-1990
DEFINITION Chlamydomonas reinhardtii mRNA for 17 kd P21 protein of photosystem
I.
ACCESSION X13495 . . .
From an existing codon frequency file: x13496.cod FileCheck: 6764
CODONFREQUENCY February 12, 1992 09:30
>From : Creps1p30.Gb_Pl check: 239 from: 40 to: 333
LOCUS CREPS1P30 579 bp ss-mRNA PLN 15-MAR-1990
DEFINITION Chlamydomonas reinhardtii mRNA for 8.1 kd P30 protein of
photosystem I.
ACCESSION X13496 . . .
From an existing codon frequency file: x13826.cod FileCheck: 3540
CODONFREQUENCY July 21, 1993 11:40
>From : CREOEE1.SEQ* check: 3660 from: 154 to: 1029
LOCUS CREOEE1 1714 bp ss-mRNA PLN 15-MAR-1990
DEFINITION Chlamydomonas reinhardtii psb1 mRNA for OEE1 protein of photosystem
II (oxygen-evolving enhancer protein).
ACCESSION X13826 . . .
From an existing codon frequency file: x13832.cod FileCheck: 1618
CODONFREQUENCY July 21, 1993 11:54
>From : CREOEE3.SEQ* check: 7382 from: 307 to: 906
LOCUS CREOEE3 1542 bp ss-mRNA PLN 15-MAR-1990
DEFINITION Chlamydomonas reinhardtii psb3 mRNA for OEE3 protein of photosystem
II (oxygen-evolving protein).
ACCESSION X13832 . . .
From an existing codon frequency file: x14549.cod FileCheck: 1938
CODONFREQUENCY February 11, 1992 20:06
>From : Crersp3.Gb_Pl check: 9230 from: 361 to: 438
continuing on: Crersp3.Gb_Pl check: 9230 from: 547 to: 692
continuing on: Crersp3.Gb_Pl check: 9230 from: 820 to: 1040
continuing on: Crersp3.Gb_Pl check: 9230 from: 1268 to: 2373
LOCUS CRERSP3 3000 bp ds-DNA PLN 15-MAR-1990 . . .
From an existing codon frequency file: x15053.cod FileCheck: 8782
CODONFREQUENCY February 11, 1992 19:48
>From : Crehsp22k.Gb_Pl check: 8851 from: 87 to: 560
LOCUS CREHSP22K 1097 bp ss-mRNA PLN 15-MAR-1990
DEFINITION Chlamydomonas reinhardtii 22kDa heat shock protein.
ACCESSION X15053
KEYWORDS heat shock protein. . . .
From an existing codon frequency file: x15164.cod FileCheck: 4804
CODONFREQUENCY July 26, 1993 15:07
>From : x15164.seq check: 9780 from: 13 to: 405
LOCUS CRPSAH 816 bp RNA PLN 19-DEC-1989
DEFINITION Chlamydomonas reinhardhii psaH mRNA for 11KD subunit of photosystem
I (polypeptide 28)
ACCESSION X15164 . . .
From an existing codon frequency file: x15165.cod FileCheck: 8750
CODONFREQUENCY July 26, 1993 15:05
>From
