The Chlamydomonas BAC end sequences are done, and are now available
on a web site at JGI. Sequences are available for download or blast
searching at:
http://bahama.jgi-psf.org/prod/bin/chlamy/home.chlamy.cgi.
This is still fairly raw. The JGI is working on adding functionality to
the site (for example, allowing you to search by well number, and by
tblastn). For now, what you can do is either download all 30,000
sequences or search by blastn with nucleotide sequence. One nice
thing they do provide is that if you get a hit, you get the sequence
of the other end of the BAC clone, enabling you to find closely
spaced molecular probes easily.
The blast utility is at
http://bahama.jgi-psf.org/prod/bin/blast.chlamy.cgi
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