[Chlamydomonas] BLAST gainst AUGUSTUS proteins

Mario Stanke via chlamy%40net.bio.net (by mstanke from gwdg.de)
Tue Sep 2 05:29:11 EST 2008


Dear all,

as Erik Hom mentioned that there were some requests for a BLAST service we set 
up a BLAST server that allows to search protein and DNA sequences in the 
AUGUSTUS protein set of Chlamydomonas.

http://gbrowse.gobics.de/blast/blast.php

The BLAST result list contains links to our genome browser ( 
http://gbrowse.gobics.de/cgi-bin/gbrowse/chlamydomonas/ ), which now also 
contains the JGI gene sets (JGI2, JGI3, JGI3_1) mapped to a fourth version of 
the genome assembly. Please, be aware that these JGI tracks are gene 
structures from mapping back amino acid sequences that were derived on a 
different assembly and are only close to the original JGI proteins and are 
not always at unique locations.

Suggestions are always welcome, although I might not have time to realize any 
request ;-)

Peace, Mario

-- 
----------------------------------------
Dr. Mario Stanke
Institut für Mikrobiologie und Genetik
Abteilung für Bioinformatik
Goldschmidtstr. 1, 37077 Göttingen, Germany
phone: +49 551 39 14926
http://gobics.de/mario
----------------------------------------



More information about the Chlamy mailing list