multiple sequence alignment

higgins at ebi.ac.uk higgins at ebi.ac.uk
Sat Nov 11 21:06:49 EST 1995


In article <47qqkq$due at mercury.hgmp.mrc.ac.uk>, gwilliam at hgmp.mrc.ac.uk (Gary Williams) writes:
> In article <47o0m4$st at netnews.upenn.edu>,
> Jason Miller <millerj at equity.wharton.upenn.edu> wrote:
>>Does anyone know of a survey of algorithms and programs that perform 
>>multiple sequence alignment? I'm sure it has been done in the 
>>introduction to someone's PhD thesis. Thanks.
>>
>>-- Jason Miller, University of Pennsylvania, millerj at wharton.upenn.edu
> 
> 
> It depends on how much detail you require.
> You could try looking at some of the following:
> 
> Discussion Theme: The MSA algorithm
> http://www.techfak.uni-bielefeld.de/bcd/Lectures/kececioglu.htm
                                                          ^^^^^^^^
> 
> A Gentle Guide to Multiple Alignment, (Georg Fuellen)
> http://www.techfak.uni-bielefeld.de/bcd/Curric/MulAli/mulali.htm
> 
> Multiple Sequence Alignments (Fredj Tekaia)
> http://www2.pasteur.fr/~tekaia/MAcours/multalign.html
> 
> ClustalW tutorial, (Fredj Tekaia)
> http://www2.pasteur.fr/~tekaia/MAcours/clustalw.html
> 
> ClustalW tutorial, (Andrew T. Lloyd)
> http://biotech.bio.tcd.ie/acerhelp/ClustalW-Acerhelp.RTF.txt.html
> 
> 
> -- 
> GARY WILLIAMS,  Internet: G.Williams at HGMP.MRC.AC.UK        Tel: 01223 494522
> Computing Services, HGMP Resource Centre,     
> Hinxton Hall, Hinxton, Cambridge, CB10 1RQ    
> <a href=http://www.hgmp.mrc.ac.uk/>UK MRC HGMP Resource Centre</a>
> 

Thanks for posting that Gary; the MSa tutorial by Kececioglu is interesting.
I just had a look.
There is a typo in the URL; add a "l" to the end: ......ures/kececioglu.html


Des Higgins
EMBL/EBI, Hinxton (about 90 seconds walk from gary's office).
 




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