Tutorial -- "Image Restoration for 3-D Microscopy"
Ken Clark
kwc at ibc.wustl.edu
Wed Jan 3 08:50:36 EST 1996
Tutorial Announcement
"Image Restoration for 3-D Microscopy"
When: Saturday, April 27, 1996; 08:00 to 17:00
(Demonstrations and a social mixer: evening prior)
Where: Washington University,
Institute for Biomedical Computing
St. Louis, Missouri USA
Audience: Biologists who are currently using or considering
use of image restoration or deconvolution methods
for 3-D fluorescence microscopy.
Cost: $25
Maximum number of participants: 30
Additional information: http://ibc.wustl.edu/bcl/cosm_tut.html
Enquiries: kwc at ibc.wustl.edu
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Course Outline
Perspective and Goals
Confocal Microscopy
Fully Confocal
Partial Confocal
Computational 3-D Microscopy
3-D Fluorescence
Partially Confocal
New Technologies
Point-Spread Function (PSF) & Image formation
PSF Definition
PSF Measurement
Theoretical PSF Computation
Theoretical and Measured PSF Trade-offs
Aberrations
Data Collection and Noise Sources
CCD cameras, SIT & I-SIT cameras, PMT's
Sampling (x,y, and especially z)
Exposure Time
Photon Noise
Bleaching
Phototoxicity
Fluorescence Saturation
Imaging the Relevant Region: Truncated Data, Missing Data
Image Restoration
Convolution
Restoration Algorithms
Nearest Neighbor (e.g. Vaytek)
Jansson-Van Cittert (e.g. Applied Precision)
Constrained Least Squares (e.g. Scanalytics)
Maximum Likelihood
Blind Deconvolution
(e.g. Noran Instruments, AutoQuant Imaging)
Noise Assumptions
Computing and Memory Requirements
Comparison of Algorithms for Image Restoration
Discussion of Methods For Viewing 3-D Data Sets
Panel Session with Users of 3-D Microscopy
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