Hi, Dear Netters:
Several days ago, I wrote:
> I need to read a recent review paper listing various hydrophobicity indices
> of 20 amino acids, measured or calculated by various methods.
> I am grateful to anybody for showing me the reference of such a paper
> via e-mail.
> My e-mail address: ctzhang at tju.edu.cn
> Ren Zhang
Now I have received many valuable information and I thank all those who ever
helped me. I summarize their responses as follows for you reference:
1. C.S.Raman :
Tomii K; Kanehisa M.
Analysis of amino acid indices and mutation matrices for sequence
comparison and structure prediction of proteins.
Protein Engineering, 1996 Jan, 9(1):27-36.
2. C. Zheng
1. Eisenberg et al Nature 319, 199(1986)
2. Kyte et al J. Mol. Biol. 157, 105(1982)
3. Weaver, Biopolymers 32, 477 (1992)
3. R. Hall
Tanford, C. (1970). Adv. Prot. Chem. 24: 1-95.
Tanford, C. (1973) The Hydrophobic Effect, Wiley, NYNY.
4. D. Nitecki
Int.J.P.prot.Res 35, 378, 1990
5. Shaun D. Black
http://pegasus.uthct.edu/ResUTHCT/Investigators/SBlack/aagrease.htmlhttp://pegasus.uthct.edu/ResUTHCT/Investigators/SBlack/aamodgre.html
6. Paul Davis
Nakai, K., Kidera, A., and Kanehisa, M.; Cluster analysis of
amino acid indices for prediction of protein structure and
function. Protein Eng. 2, 93-100 (1988)
Tomii, K. and Kanehisa, M.; Analysis of amino acid indices and
mutation matrices for sequence comparison and structure
prediction of proteins. Protein Eng. 9, 27-36 (1996).
7. John Marcus
http://www.eng.uci.edu/~hslee/aainfo/hydro.htm
8. John R. Jungck
BioQUEST Curriculum Consortium homepage:
http://www.beloit.edu/~bquest
The BioQUEST Library homepage:
http://terrapin.umd.edu/BioQUEST_Libray.html
Bioscene: Journal of College Biology Teaching homepage:
http://papa.indstate.edu/amcbt/bioscene.html
Computational Molecular Biology and Molecular
Bioinformatics Workshop homepage:
http://juno.ucsd.edu/~sje/thailand.html
9. John Philo
Hydrophobicity values are available on the net from the Skirball
Institute site at
http://128.122.10.5/aainfo/contents.htm
Also visit Shaun Black's site in Texas with data for modified amino
acids and references:
http://pegasus.uthct.edu/ResUTHCT/Investigators/SBlack/aamodgre.html
10. J.Krishnamurti
If we really understand the problem, the answer will come out of it,
because the answer is not separate from the problem.
Ren Zhang