ctzhang at tju.edu.cn wrote:
>> Dear netters:
>> I'd like to know a protein database, satisfying the following conditions:
>> 1) The pairwise sequence identity less than 30%
> (i.e., non-homologous proteins);
> 2) Reflecting the current state of the Brookhaven Protein Data Bank.
>
For known-structure proteins, the CATH list from
http://www.biochem.ucl.ac.uk/bsm/biocomp/index.html
should suffice.
rob.
--
--------------------------------------------------------------------------
Robert T. Miller, Ph.D.
rmiller at sanbi.ac.za
Manager, Durban Satellite, South African National Bioinformatics
Institute
Department of Molecular Virology, University of Natal, Durban, S.
Africa
h: www.sanbi.ac.za p: +27 (0)31 2604580 f: +27 (0)31 3603744 or
2604441
--------------------------------------------------------------------------
