For those interested in using MATLAB to generate VRML 2.0 animations
of molecular dynamics sequences, the VRML Molecule Toolbox (VMT)
(http://gepasi.dbs.aber.ac.uk./bka/vrml/vmt.htm) may be of help.
The VMT can do the following:
1) Create a animation from a sequence of conformations
(molecular_dynamics2VRML.m)
2) Create a static VRML object with bonds for a molecule (vrmlmol.m)
3) Generates VRML mesh surfaces. (mesh2VRML.m)
2) Generates extruded shapes. (extrusion.m)
Note that no bonds are included between atoms in the animation.
Two script-files have been created to demonstrate the use of the most
important
routines in the toolbox:
script1.m - generation of static model of a molecule with bonds
script2.m - generation of animation.
Requirements:
MATLAB 5.x
Please visit
http://gepasi.dbs.aber.ac.uk./bka/vrml.htm
which contains VMT examples.
Dr. Bjxrn K. Alsberg
Institute of Biological Sciences
University of Wales
Aberystwyth, Ceredigion,
SY23 3DA
United Kingdom
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http://gepasi.dbs.aber.ac.uk/bka/myopt.htm
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