Converting sequence alignment formats
Jeroen Raes
jraes at uia.ua.ac.be
Mon Nov 2 21:13:36 EST 1998
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ForCon 1.0 for Win95/98/3.1 and Win NT 3.5/NT 4.0
-------------------------------------------------
ForCon is a user-friendly software tool developed for the easy
conversion of nucleic acid and amino acid sequence alignment formats. At
the moment, ForCon is able to convert – in
both ways, i.e. reading and writing - the following formats (or formats
used by the following software packages):
CLUSTAL
EMBL
FASTA
GCG/MSF
Hennig86
MEGA
NBRF/PIR
PAUP/Nexus
Parsimony Jackknifer
PHYLIP
TREECON
The following options are also included:
- A selection of sequences can be made.
- Partial alignments can be created by selecting certain regions or
codon positions.
- Output of a so-called ‘Pretty’ format for publication.
ForCon can be downloaded for free at:
http://bioc-www.uia.ac.be/u/jraes/index.html
Comments and/or suggestions are welcome.
________________________________________________________________
Jeroen Raes
Research Group of Molecular Biology
Dept. of Biochemistry
University of Antwerp (UIA)
Universiteitsplein 1
B-2620 Wilrijk
BELGIUM
Email: jraes at uia.ua.ac.be
http://bioc-www.uia.ac.be/u/jraes/index.html
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<TT></TT>
<BR><TT>ForCon 1.0 for Win95/98/3.1 and Win NT 3.5/NT 4.0</TT>
<BR><TT>-------------------------------------------------</TT><TT></TT>
<P><TT>ForCon is a user-friendly software tool developed for the easy conversion
of nucleic acid and amino acid sequence alignment formats. At the moment,
ForCon is able to convert – in</TT>
<BR><TT>both ways, i.e. reading and writing - the following formats (or
formats used by the following software packages):</TT><TT></TT>
<P><TT>CLUSTAL</TT>
<BR><TT>EMBL</TT>
<BR><TT>FASTA</TT>
<BR><TT>GCG/MSF</TT>
<BR><TT>Hennig86</TT>
<BR><TT>MEGA</TT>
<BR><TT>NBRF/PIR</TT>
<BR><TT>PAUP/Nexus</TT>
<BR><TT>Parsimony Jackknifer</TT>
<BR><TT>PHYLIP</TT>
<BR><TT>TREECON</TT><TT></TT>
<P><TT>The following options are also included:</TT><TT></TT>
<P><TT>- A selection of sequences can be made.</TT>
<BR><TT>- Partial alignments can be created by selecting certain regions
or codon positions.</TT>
<BR><TT>- Output of a so-called ‘Pretty’ format for publication.</TT><TT></TT>
<P><TT>ForCon can be downloaded for free at:</TT><TT></TT>
<P><TT><A HREF="http://bioc-www.uia.ac.be/u/jraes/index.html">http://bioc-www.uia.ac.be/u/jraes/index.html</A></TT><TT></TT>
<P><TT>Comments and/or suggestions are welcome.</TT>
<BR><TT> </TT><TT></TT>
<P><TT>________________________________________________________________</TT><TT></TT>
<P><TT>Jeroen Raes</TT>
<BR><TT>Research Group of Molecular Biology</TT>
<BR><TT>Dept. of Biochemistry</TT>
<BR><TT>University of Antwerp (UIA)</TT>
<BR><TT>Universiteitsplein 1</TT>
<BR><TT>B-2620 Wilrijk</TT>
<BR><TT>BELGIUM</TT><TT></TT>
<P><TT>Email: jraes at uia.ua.ac.be</TT>
<BR><TT><A HREF="http://bioc-www.uia.ac.be/u/jraes/index.html">http://bioc-www.uia.ac.be/u/jraes/index.html</A></TT>
<BR><TT> </TT></HTML>
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