In article <7dfn70$m6i$1 at news.nyu.edu>, "Tao Tong"
<tongt01 at endeavor.med.nyu.edu> wrote:
> > Is there a program that will detect full and partial pallindromes within
> > a given DNA sequence.
There is a rather nasty but free UNIX/VMS program called Overseer that will
do the job for you. It is available from the EMBL software archive:
<http://www.ebi.ac.uk/biocat/Searching_databases.html>
I am currently working on web interface to this program. I will post a message
to the group when it is done.
Also, the GCG program STEMLOOP will find inverted repeats with gaps between
them.
--
Stuart M. Brown
Bioinformatics Consultant
NYU Medical Center, 550 First Ave, NY, NY
