MatrixPlot - visualizing sequence constraints

Jan Gorodkin gorodkin at nf.au.dk
Wed Oct 27 22:43:29 EST 1999


J. Gorodkin, H. H. Staerfeldt, O. Lund, and S. Brunak 
Bioinformatics 15:769-770, 1999.
http://www.cbs.dtu.dk/services/MatrixPlot/


MatrixPlot is a program for making high quality matrix plots, such as
mutual information plots of sequence alignments and distance matrices of
sequences with known three-dimensional coordinates. The user can add
information about the sequences (e.g. a sequence logo profile)
along the edges of the plot, as well as zoom in on any region in the plot.
The user can also type in the name of a PDB entry and receive the
distance matrix directly. It is also illustrated how output generated
from other web servers can be exported to the MatrixPlot server.


Jan Gorodkin
Department of Ecology and Genetics
The institute of Biological Sciences
University of Aarhus
B540, Ny Munkegade DK-8000 Aarhus C
Denmark
Email: gorodkin at biology.au.dk



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