Pathways and graphs

Tim Cutts timc at chiark.greenend.org.uk
Tue Jan 9 16:54:48 EST 2001


In article <93aenb$udb$1 at nnrp1.deja.com>,  <vinpan at my-deja.com> wrote:
>Hi,
>
> I am trying to relate pathway database and gene expression data. For
>complete automation, one needs the pathways not in GIF image format(as
>in kegg database) but in some text format that specifies the graph of
>reaction labelled by enzymes or genes. Is anyone aware of text
>representations of the pathways? Any help will
>be great. Thanks a lot.

You might want to investigate graphviz:

http://www.research.att.com/sw/tools/graphviz/

I have found this to be a simple and useful textual representation of
directed graphs.

Tim.







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