In article <93aenb$udb$1 at nnrp1.deja.com>, <vinpan at my-deja.com> wrote:
>Hi,
>> I am trying to relate pathway database and gene expression data. For
>complete automation, one needs the pathways not in GIF image format(as
>in kegg database) but in some text format that specifies the graph of
>reaction labelled by enzymes or genes. Is anyone aware of text
>representations of the pathways? Any help will
>be great. Thanks a lot.
You might want to investigate graphviz:
http://www.research.att.com/sw/tools/graphviz/
I have found this to be a simple and useful textual representation of
directed graphs.
Tim.
