big problem / blast command line parameters.
Paul Guermonprez
LnG at LnG.net
Thu May 31 13:20:09 EST 2001
hello,
i try to execute a blast search against several bases.
i would like to make this command work :
blastall -p blastn -d "base1 base2" -i input.txt -o output.txt
these commands are working :
blastall base1 input.txt output.txt
blastall base2 input.txt output.txt
blastall base1 input.txt > output.txt
blastall base2 input.txt > output.txt
but not :
blastall -d base1 -i input.txt -o output.txt
blastall -d base2 -i input.txt -o output.txt
blastall -d base1 -i input.txt > output.txt
blastall -d base2 -i input.txt > output.txt
blastall -p blastn -d base1 -i input.txt -o output.txt
blastall -p blastn -d base2 -i input.txt -o output.txt
blastall -p blastn -d "base1 base2" -i input.txt -o output.txt
the error message is :
"ERROR: No argument given for BLAST report utput File"
any ideas ?
running NCBI blast / redhat 7
paul guermonprez.
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