In article <agjeie$pcn$02$1 at news.t-online.com>, Ulrik wrote:
> I've posted the sequence on http://bioinfo.pl/meta/ . I havent been able to
> figure out if I get a file with the coordinates for the structure or
> what....
>> All I really want to do is to use it for a presentation of my bachelor
> project where I've worked with five mutants of the human thymidine kinase 1.
> I never meant to start a new project :-)
Most of the servers used by http://bioinfo.pl/meta just return
alignments of the target sequence with the most probable templates of
known structure. I believe that the meta server converts the backbones
PDB format for your to look at, but make no attempt to put the
sidechains on or fill in the gaps. There are servers that do that,
but it is not clear whether they really add value to the models---they
make them more complete, but they often tradeoff correctness in doing so.
Kevin Karplus karplus at soe.ucsc.eduhttp://www.soe.ucsc.edu/~karplus
life member (LAB, Adventure Cycling, American Youth Hostels)
Effective Cycling Instructor #218-ck (lapsed)
Professor of Computer Engineering, University of California, Santa Cruz
Undergraduate Director, Bioinformatics
Affiliations for identification only.
