cDNA <-> genomic DNA

[Gary Williams]

One of the best programs to do this is SIM4.

There is a public interface to this at:
http://pbil.univ-lyon1.fr/sim4.php

Gary

In article <bcor4j$ok4$1 at charm.magnus.acs.ohio-state.edu>,
Vayuputra <vayuputra369 at hotmail.com> wrote:
>Hi,
>
>Is there an online resource which allows me to align a cDNA sequence with a
>corresponding genomic sequence?  In other words, if I'm trying to find out
>the intron-exon structure of a cDNA I have with some genomic sequence
>information I obtained, what's the best way to get the intron-exon structure
>info.?

Gary Williams               Tel: +44 1223 494522  Fax: +44 1223 494512
mailto:G.Williams at hgmp.mrc.ac.uk          http://www.hgmp.mrc.ac.uk/
Bioinformatics, MRC HGMP, Hinxton, Cambridge, CB10 1SB, UK