Vayuputra <vayuputra369 at hotmail.com> wrote:
> Hi,
> Is there an online resource which allows me to align a cDNA sequence with a
> corresponding genomic sequence? In other words, if I'm trying to find out
> the intron-exon structure of a cDNA I have with some genomic sequence
> information I obtained, what's the best way to get the intron-exon structure
> info.?
Dot-plots are a pretty good way to do that. E.g. using dotmatcher,
dotpath or dottup from the EMBOSS suite.
http://www.hgmp.mrc.ac.uk/Software/EMBOSS/
cu
Philipp
--
Dr. Philipp Pagel Tel. +49-89-3187-3675
Institute for Bioinformatics / MIPS Fax. +49-89-3187-3585
GSF - National Research Center for Environment and Health
Ingolstaedter Landstrasse 1
85764 Neuherberg
Germany
