IUBio

Problem in compiling GlimmerM on Linux

Jason Stajich jason.stajich at NOSPAMBOTS.duke.edu
Fri May 23 23:06:21 EST 2003


Allen Gathman wrote:
> I'm trying to train GlimmerM for a new species, and having a problem
> with the makefile.  While I can compile and run GlimmerM for the
> included species files (Arabidopsis, etc.), when I try to go into the
> "train" directory and run "make", an error occurs:
> 
> karlin.c: in function "main" : 
> karlin.c:57:
> warning: return type of 'main' is not 'int'.
> 
> It appears to continue running make after that point, though. But when
> I try to run trainGlimmerM, it says "command not found," so it's
> apparent that the compiling hasn't completed.
> 
> Line 57 in karlin.c reads:
>  void main (int argc, char * argv [] )
> 
> Anyone else experience this problem?  Or have a suggestion for solving
> it?
> 

Change:

void main
to
int main

You can also grab Glimmer 2.5.0 which was just released 5/21/03 and 
seems to have fixed these compiling errors.




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