Blastall Batch Utility: Online script generation

Ariel Dolan aridolan at netvision.net.il
Thu Mar 11 16:14:17 EST 2004


The "Blastall Batch Utility" is an online web application, designed to
generate batch files (or command strings) for running the NCBI Blastall
program locally. One version is used to run directly a Fasta file vs.
another Fasta file, another to run a Fasta file against a local Blast
database. It supports interactive selection of input files, setting Blast
parameters, assisted generation of output file names, and saving the batch
files to the local disk.

To run a Fasta File vs. another Fasta file:
Simple version: http://www.aridolan.com/bbu/bbufj.aspx?mode=ff
Advanced version: http://www.aridolan.com/bbu/bbuff.aspx?mode=ff

To run a Fasta File vs. a local Blast database:
Simple version: http://www.aridolan.com/bbu/bbufj.aspx?mode=fd
Advanced version: http://www.aridolan.com/bbu/bbuff.aspx?mode=fd

To format a Fasta file as a local Blast database:
http://www.aridolan.com/bbu/bbufmt.aspx

Overview page:
http://www.aridolan.com/bbu/bbuintro.aspx


Feedback is welcome.

Regards,
Ariel
==================================================
Ariel Dolan
aridolan at netvision.net.il

Artificial Life and other Experiments
http://www.aridolan.com
http://www.arieldolan.com
==================================================





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