Block-wise alignment of nucleotide sequences?

[Peter Frank]

Michael Spitzer wrote:

>Hi!
>
>> I am looking for a program that allows me to perform block-wise
>> alignment of nucleotide sequences (for example genomic and mRNA
>> sequences).
>
>Maybe this is something like what you're looking for:
>
>http://globin.cse.psu.edu/html/docs/sim4.html

Yes, that program does what I am looking for. Thanks for the link. It
could be a little more user-friendly because I don't like command-line
operation but then again I can't have it all.
As I found out later there is also a program called Spidey at the NCBI
(http://http://www.ncbi.nlm.nih.gov/spidey/), which seems to do what I
am looking for.

Peter